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selkamand
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ggoncoplot
Easily Create Interactive Oncoplots
https://selkamand.github.io/ggoncoplot/
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Marginal Gene Barplot Breaks Too Dense
#105
selkamand
closed
5 months ago
0
add section to vignette about saving the oncoplot to different formats
#104
selkamand
closed
5 months ago
0
docs: paper first-draft
#103
selkamand
closed
5 months ago
0
add paper folder to Rbuildignore
#102
selkamand
closed
5 months ago
0
Update readme link to link to new manual vignette not quick_start
#101
selkamand
closed
5 months ago
0
Create a JOSS paper
#100
selkamand
closed
5 months ago
0
Dev
#99
selkamand
closed
5 months ago
0
80 add acknowledgements + update license ahead of release
#98
selkamand
closed
5 months ago
0
rename vignette
#97
selkamand
closed
5 months ago
0
Add a vignette example describing how you would use ggoncoplot with expression data / microbiome data
#96
selkamand
opened
5 months ago
0
fix: factor variables auto converted to characters
#95
selkamand
closed
5 months ago
0
Mutation Type Assertion fails when factor is supplied
#94
selkamand
closed
5 months ago
0
docs: readme chunk size tweaked
#93
selkamand
closed
5 months ago
0
Fix fig width / height of readme figures
#92
selkamand
closed
5 months ago
0
fix!: ported visualisation options to ggoncoplot_options function to …
#91
selkamand
closed
5 months ago
0
Add a 'options' argument to ggoncoplot that controls all the visual properties so the roxygen documentation is cleaner
#90
selkamand
closed
5 months ago
0
87 ggexpress integration in readme
#89
selkamand
closed
6 months ago
0
Add an example of using lots of options
#88
selkamand
closed
5 months ago
0
ggexpress integration in readme
#87
selkamand
closed
6 months ago
0
When copying text to clipboard we should strip html characters out (e.g. <br>>
#86
selkamand
opened
10 months ago
0
feat: added copy argument and ability to copy values to clipboard on …
#85
selkamand
closed
10 months ago
0
Dev
#84
selkamand
closed
10 months ago
0
Error in ggoncoplot
#83
selkamand
closed
10 months ago
1
Fix Selection or remove lasso
#82
selkamand
closed
4 months ago
1
Fix Usage: Add both TMB and and Gene Barplots
#81
selkamand
closed
5 months ago
0
Add acknowledgements + update license ahead of release
#80
selkamand
closed
5 months ago
0
Percentages of samples with alteration on the y axis of the barplot
#79
ConYel
closed
5 months ago
4
Sorting of sample IDs should take pathways into account
#78
selkamand
opened
1 year ago
0
feat: moved gene names and clin info to left side
#77
selkamand
closed
1 year ago
0
fix: display gene axis + metadata feature names on left side
#76
selkamand
closed
1 year ago
0
Switch Genes + metadata labels to left side
#75
selkamand
closed
1 year ago
1
fix: throw error if & delimited SO consequences are found in mutation…
#74
selkamand
closed
1 year ago
0
feat: sample header always included in tooltip even if set to non sam…
#73
selkamand
closed
1 year ago
0
Always show sample_id on tooltip
#72
selkamand
closed
1 year ago
0
replace assert_has_no_missing_values with assert_no_missing
#71
selkamand
closed
1 year ago
1
Add automatic SO consequence ranking for & separated SO terms
#70
selkamand
closed
1 year ago
2
Turn full usage vignette into a R book hosted elsewhere
#69
selkamand
opened
1 year ago
0
fix: fixed assert_has_duplicates -> assert_no_duplicates
#68
selkamand
closed
1 year ago
0
update assertions assert_no_missing and assert_no_duplicates
#67
selkamand
closed
1 year ago
0
Pathway fix: try setting strip.placement = 'outside' for TMB/sample metadata lacking facets
#66
selkamand
opened
1 year ago
1
Fix genebar tooltip
#65
selkamand
closed
5 months ago
0
reworked pathway faceting
#64
selkamand
closed
1 year ago
0
Allow faceting without showing strip
#63
selkamand
closed
1 year ago
0
feat: exposed all properties of gg1d::gg1d_plot via ... args
#62
selkamand
closed
1 year ago
0
expose all gg1d arguments to ggoncoplot via ...
#61
selkamand
closed
1 year ago
0
Add option to Sort pathways by total distinct samples with any gene in pathway mutated
#60
selkamand
opened
1 year ago
1
50 add support for grouping oncoplot by pathways
#59
selkamand
closed
1 year ago
0
56 dont drop mutations if col mutation type = na
#58
selkamand
closed
1 year ago
0
Recreate all tests using simulated data instead of large GBM dataset
#57
selkamand
opened
1 year ago
0
Dont drop mutations if col_mutation_type = NA
#56
selkamand
closed
1 year ago
0
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