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selkamand
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ggoncoplot
Easily Create Interactive Oncoplots
https://selkamand.github.io/ggoncoplot/
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Add ability to control legend size - either through controlling rows/columns of table or size of text
#55
selkamand
closed
5 months ago
0
Add option to avoid collapsing mutation_type into 'multi-hit' if all mutations are the same type
#54
selkamand
opened
1 year ago
0
Shorten error message when lots of samples with metadata have no mutations
#53
selkamand
opened
1 year ago
0
expose margin control and na_marker options of gg
#52
selkamand
opened
1 year ago
0
show_all_samples bug - shows sample with mutation last, after all the samples missing mutational data were shown
#51
selkamand
opened
1 year ago
0
Add support for grouping oncoplot by pathways
#50
selkamand
closed
1 year ago
2
Expose property of gg1d that lets you control vertical space between metadata tileplots
#49
selkamand
opened
1 year ago
0
Avoid .data in tidyselect expressions
#48
selkamand
closed
5 months ago
1
Unify look and scale of ggplot vs ggiraph
#47
selkamand
closed
4 months ago
3
Expose gg1d_plot `palettes` option to allow users to customise metadata tile colours
#46
selkamand
closed
1 year ago
2
Update combine_plots to respect gg_tmb_height and friends
#45
selkamand
closed
1 year ago
1
fix plotting unit tests of plots: expect_snapshot to vdiffr
#44
selkamand
opened
1 year ago
0
unit test clinical annotations
#43
selkamand
closed
1 year ago
1
Switch assertthat to assertions
#42
selkamand
closed
5 months ago
1
Clinical annotation y axis text too far awar
#41
selkamand
opened
1 year ago
0
feat: annotate oncoplot with clinical annotations
#40
selkamand
closed
1 year ago
1
Sort by clinical annotations
#39
selkamand
opened
1 year ago
0
Change legend layout
#38
selkamand
closed
1 year ago
1
Usage vigenette: How can you use palette to customise mutations?
#37
selkamand
opened
1 year ago
0
Documentation: fix 'Add both TMB and ' section
#36
selkamand
closed
1 year ago
1
Total mutations
#35
selkamand
closed
1 year ago
1
Deal with size issue
#34
selkamand
opened
1 year ago
0
Sample inclusion logic
#33
selkamand
closed
1 year ago
1
Add option to automatically filter out any samples with metadata but ZERO mutations, even if `show_all_samples = TRUE`
#32
selkamand
closed
1 year ago
1
Genes plot
#31
selkamand
closed
1 year ago
2
Add mutation burden for each sample in vertical margin plot
#30
selkamand
closed
1 year ago
2
Create Gene Barplot Functionality
#29
selkamand
closed
1 year ago
2
Change custom tooltip multi-mutation collapse seperator from ; to \n
#28
selkamand
closed
1 year ago
1
Genes plot
#27
selkamand
closed
1 year ago
0
Genes plot
#26
selkamand
closed
2 years ago
0
Add option to oncoplot specific genes, but still sort based on mutational status
#25
selkamand
opened
2 years ago
1
Avoid double rendering of mutated tiles (grey tile rendered underneath coloured)
#24
selkamand
closed
2 years ago
1
Oncoplots upside down
#23
selkamand
closed
2 years ago
1
Code refactors
#22
selkamand
closed
2 years ago
0
Add data_id to ggoncoplot_prep_df returned dataframes and add test
#21
selkamand
closed
2 years ago
1
Once ggiraph opts_selection_inv function is supported on cran, make nonselected samples opacity = 0.2
#20
selkamand
closed
4 months ago
1
Make ggiraph hover functionality stick on click
#19
selkamand
closed
2 years ago
1
Add support for annotating clinical features
#18
selkamand
closed
1 year ago
1
On click copy sample ID to clipboard
#17
selkamand
closed
10 months ago
1
Pull out sample order code to its own function
#16
selkamand
closed
1 year ago
2
Rendering of Static version of oncoplot shows lines collapsing into one another
#15
selkamand
opened
2 years ago
2
Add support for data id column which defaults to SampleID but could conceivably be set to the genes too
#14
selkamand
closed
2 years ago
1
Consistent colours
#13
selkamand
closed
2 years ago
1
added support for fixed colour scheme. MAF and SO terms are supported…
#12
selkamand
closed
2 years ago
1
Add option for 'coding only' that defaults to true
#11
selkamand
closed
2 years ago
1
Should multiple mutations with same class in same gene be collapsed to 'multiple' or unique('variant class')
#10
selkamand
closed
2 years ago
4
Run usethis::use_github_action("test-coverage") to setup coverage github action
#9
selkamand
closed
2 years ago
0
Separate logic for identifying topN mutated genes from a mutations db.
#8
selkamand
closed
2 years ago
1
Add unit tests tests to ensure sample Ids are appropriately ordered as factors
#7
selkamand
closed
2 years ago
3
Remove commented code from minimal usage example in usage vignette
#6
selkamand
closed
2 years ago
1
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