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seqan
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iGenVar
The official repository for the iGenVar project.
BSD 3-Clause "New" or "Revised" License
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[FEATURE] Set a min_qual default value and add a print out.
#195
Irallia
closed
2 years ago
1
[FEATURE] Use b.i.o. lib for vcf parsing.
#194
Irallia
closed
2 years ago
1
[FEATURE] Use b.i.o. library for vcf parsing.
#193
Irallia
closed
2 years ago
0
[DOC] Update doxygen to 1.9.3 and fix warnings
#192
Irallia
closed
2 years ago
1
[DOC] Update doxygen support to 1.9.3
#191
Irallia
closed
2 years ago
0
[INFRA] Remove gcc/g++ 7 and 8 support & Update seqan3 submodule
#190
Irallia
closed
2 years ago
6
[TEST] Improve plot with adding F1 curves
#189
Irallia
closed
2 years ago
1
Update bamit library.
#188
joshuak94
closed
2 years ago
1
[MISC] Update seqan3 to get thread problem fixed.
#187
Irallia
closed
2 years ago
0
[BENCHMARK] Repair script & update caller versions
#186
Irallia
closed
2 years ago
2
[BENCHMARK] Get deterministic results.
#185
Irallia
closed
2 years ago
1
[BENCHMARK] Make iGenVar results deterministic
#184
Irallia
closed
2 years ago
0
[FEATURE] Add filedate to VCF
#183
Irallia
closed
2 years ago
1
[FEATURE] Add filedate to VCF header
#182
Irallia
closed
2 years ago
0
update bamit library to include read depth sampling functionality.
#181
joshuak94
closed
2 years ago
3
[MISC] small corrections 3
#180
Irallia
closed
2 years ago
1
[FEATURE] Call/Confirm SVs with read depth information
#179
Irallia
opened
2 years ago
4
Add BAMIntervalTree as a submodule.
#178
joshuak94
closed
2 years ago
3
update seqan to master to include the file positioning information.
#177
joshuak94
closed
2 years ago
5
[TEST] Do some short read benchmarks
#176
Irallia
closed
1 year ago
0
[FEATURE] handle short read data
#175
Irallia
closed
2 years ago
1
How do we track constant parameters?
#174
joergi-w
opened
2 years ago
0
[BUG] Count duplications in the reference
#173
Irallia
opened
2 years ago
0
[FEATURE] Extend VCF output with CN (copynumber)
#172
Irallia
opened
2 years ago
0
Calculate active regions based on Cigar information
#171
joergi-w
closed
2 years ago
1
[FIX] simplify passing file extensions to the validator
#170
joergi-w
closed
2 years ago
6
[TEST] Refactor api tests
#169
Irallia
closed
2 years ago
1
[FEATURE] Call tandem duplications from SA tag
#168
Irallia
closed
2 years ago
1
[INFRA] Add warning flags to library
#167
eseiler
closed
2 years ago
1
[FEATURE] Call Tandem Duplications from CIGAR string
#166
Irallia
opened
2 years ago
0
[FEATURE] Get Tandem Duplications from SA tag
#165
Irallia
closed
2 years ago
0
[MISC] Remove some warnings and update parser.
#164
Irallia
closed
2 years ago
1
[TEST] Add tests for tandem duplications
#163
Irallia
closed
2 years ago
1
Compute raw activity profile
#162
joergi-w
closed
2 years ago
3
[MISC] Update iGenVar parser - pass non-negative values and leave the handling to the parser
#161
Irallia
closed
2 years ago
0
Transform variables with non-negative values to unsigned
#160
joergi-w
closed
2 years ago
1
[INFRA] include app template updates
#159
Irallia
closed
2 years ago
1
[FEATURE] improve performance by eldariont
#158
Irallia
closed
2 years ago
2
[FEATURE] Add verbose option
#157
Irallia
closed
2 years ago
2
[BENCHMARK] tool comparison macro benchmarks
#156
Irallia
closed
2 years ago
1
Determine different variants from the haplotypes
#155
joergi-w
opened
3 years ago
0
Re-assemble reads to the reference genome and determine haplotypes
#154
joergi-w
opened
3 years ago
1
Determine the active regions in a genome
#153
joergi-w
closed
2 years ago
0
Calculate a raw activity profile
#152
joergi-w
closed
2 years ago
0
Read a genome
#151
joergi-w
opened
3 years ago
0
[FEATURE] Update VCF header with ALT lines
#150
Irallia
closed
3 years ago
1
Correct links in readme file
#149
joergi-w
closed
3 years ago
1
FEATURE - Detect tandem duplications with cigar
#148
Irallia
opened
3 years ago
1
[FEATURE] Add tandem_dup_count to Junction
#147
Irallia
closed
3 years ago
2
[TEST] Add more test cases to mini example:
#146
Irallia
closed
3 years ago
1
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