seqeralabs nf-aggregate issues

seqeralabs / nf-aggregate

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)

https://seqera.io/

Mozilla Public License 2.0

7 stars 10 forks source link

issues

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Profile test uses a run ID in a private workspace

#66 ejseqera opened 1 week ago
0
Fix Eclint

#65 maxulysse closed 1 week ago
0
fix Eclint

#64 maxulysse closed 1 week ago
1
Add maxForks setting for Seqera CLI to overcome API issues

#63 drpatelh closed 1 week ago
1
Dev -> Master for 0.5.0 release

#62 drpatelh opened 1 week ago
0
Remove dependency on external library/grape

#61 robsyme closed 1 week ago
2
nf-aggregate does not work without connection to public internet

#60 adamrtalbot opened 2 weeks ago
1
Connection timed out error when running at scale

#59 markpanganiban opened 3 months ago
0
Dev -> Main for 0.4.0 release

#58 drpatelh closed 3 months ago
0
fix: check if fusion is enabled via the Platform API

#57 drpatelh closed 3 months ago
1
Remove fusion retrieval to circumvent failures with nested config imports

#56 FriederikeHanssen closed 3 months ago
1
Retrieve whether fusion was used automatically

#55 FriederikeHanssen opened 3 months ago
2
Improve handleing of API request to Platform

#54 FriederikeHanssen opened 3 months ago
0
Throw exception and terminate workflow in case config can't be read

#53 FriederikeHanssen closed 3 months ago
0
Fix: Organise results folder structure by pipeline

#52 FriederikeHanssen closed 3 months ago
0
Dev -> Master for v0.3.0 release

#51 drpatelh closed 4 months ago
0
Migrate nf-test CI to latest used in nf-core/rnaseq

#50 drpatelh opened 4 months ago
0
Add custom java truststore support and improved exception handling

#49 ejseqera closed 4 months ago
3
Fix rest exception handling

#48 ejseqera closed 4 months ago
1
Seqera containers: POC 5

#47 ewels closed 4 months ago
1
Seqera containers: POC 4

#46 ewels opened 4 months ago
3
Seqera containers: POC 3

#45 ewels opened 4 months ago
1
Seqera containers: POC 2

#44 ewels opened 4 months ago
1
Seqera containers: POC 1

#43 ewels opened 4 months ago
3
Collapse results to single archive file

#42 adamrtalbot opened 4 months ago
0
"Sample Name" in MultiQC report should be the run name

#41 adamrtalbot opened 5 months ago
0
Sync TEMPLATE made with nf-core tools 2.14.1

#40 maxulysse closed 5 months ago
0
Sync TEMPLATE made with nf-core tools 2.14.1

#39 maxulysse closed 5 months ago
1
Add auto CHANGELOG

#38 adamrtalbot opened 5 months ago
0
WIP: Sync TEMPLATE made with nf-core tools 2.14.1

#37 maxulysse closed 5 months ago
1
Use Seqera containers in pipeline

#36 drpatelh opened 5 months ago
4
0.2.0 pre-release tidy up

#35 drpatelh closed 5 months ago
0
Dev -> Main for 0.2.0 release

#34 drpatelh closed 5 months ago
0
Remove docker.userEmulation

#33 adamrtalbot closed 5 months ago
2
Update all nf-core modules and subworkflows

#32 pinin4fjords closed 5 months ago
2
Update Platform API URI

#31 pinin4fjords closed 6 months ago
1
Skip Gantt plots with non-fusion runs

#30 pinin4fjords closed 6 months ago
1
Bump image for PLOT_GANTT process for Singularity

#29 pinin4fjords closed 6 months ago
0
Remove special chars from Seqera CLI version

#28 pinin4fjords closed 6 months ago
1
fix: remove escape from TOWER_ACCESS_TOKEN env var

#27 ejseqera closed 5 months ago
1
PLOT_RUN_GANTT singularity env does not have PATH set correctly

#26 pinin4fjords closed 5 months ago
2
Fails in Mamba with 'special characters' error

#25 pinin4fjords closed 6 months ago
0
Gantt plotting container needs ps for singularity

#24 pinin4fjords closed 6 months ago
0
Bump Platform CLI version to 0.9.2

#23 pinin4fjords closed 6 months ago
0
Copy in nf-test CI from nf-core/fetchngs

#22 pinin4fjords closed 6 months ago
0
update test to use cloud.seqera.io for API

#21 maxulysse closed 6 months ago
1
Update tower CLI container image to use 0.9.2

#20 ejseqera closed 6 months ago
0
Allow underscores in workspace name regex

#19 robsyme closed 6 months ago
4
nf-aggregate downloads fusion logs when fusion is not enabled

#18 ahvigil closed 5 months ago
2
Update CHANGELOG and bump pipeline version

#17 drpatelh closed 10 months ago
0