simonsfoundation inferelator_ng issues

simonsfoundation / inferelator_ng

Inferelator refactor and generalization.

BSD 2-Clause "Simplified" License

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issues

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Refactoring MI into python

#73 asistradition opened 6 years ago
1
Ndv dmel run embryo data

#72 cskokgibbs opened 6 years ago
0
Modified Design Response Driver

#71 asistradition closed 6 years ago
0
Memory optimization

#70 asistradition closed 6 years ago
2
Purged R code and replaced with native python

#69 asistradition closed 6 years ago
4
InfereClaDR

#68 kostyat opened 6 years ago
1
Ndv clean up tutorial fixing pr branch

#67 nickdeveaux closed 6 years ago
3
Ndv fix relative imports python3

#66 nickdeveaux closed 6 years ago
1
Ndv fix relative imports python3

#65 nickdeveaux closed 6 years ago
1
Running Inferelator on NYU HPC with KVS

#64 kostyat closed 6 years ago
7
Ndv dont share mi clr but still lock per bootstrap

#63 nickdeveaux opened 6 years ago
5
TFA drop duplicates

#62 dayanne-castro opened 6 years ago
2
New workflow for making the gold standard from a 50/50 split in the p…

#61 nickdeveaux closed 6 years ago
6
moved changes from older branch ndv_design_response_delTmin_bug to here

#60 nickdeveaux closed 6 years ago
2
Ndv teardown timely

#59 nickdeveaux closed 6 years ago
1
Ndv aaron watters pr kvs

#58 nickdeveaux closed 6 years ago
1
Use kvs module

#57 AaronWatters closed 6 years ago
2
Ndv design response del tmin bug

#56 nickdeveaux closed 6 years ago
5
removed redundant lines of code, like X=X

#55 nickdeveaux closed 6 years ago
3
test the kvs implementation of bbsr

#54 nickdeveaux closed 6 years ago
3
inferelator should run from any directory

#53 AaronWatters opened 6 years ago
1
Ndv short script check slurm

#52 nickdeveaux closed 6 years ago
5
Running without KVS

#51 kostyat closed 6 years ago
7
removed unused code to make debugging unit tests easier

#50 nickdeveaux closed 6 years ago
2
Ndv bbsr cluster with refactor merged in with md5sum

#49 nickdeveaux closed 7 years ago
0
reduce number of predictors should probably use backwards or forwards selection

#48 AaronWatters opened 7 years ago
0
Ndv cross validation

#47 nickdeveaux opened 7 years ago
1
Should use standard doc strings

#46 AaronWatters opened 7 years ago
0
prior + BBSR workflow and example input files

#45 dayanne-castro opened 7 years ago
1
Bbsr cluster with refactor merged in

#44 nickdeveaux closed 7 years ago
8
Translation.py

#43 tymor22 closed 6 years ago
2
Bbsr refactor

#42 tymor22 closed 7 years ago
14
MI tests failing

#41 dayanne-castro opened 7 years ago
4
replaced design response R code with python implementation

#40 tymor22 closed 7 years ago
4
Update Bsubtilis example dataset

#39 ryi06 closed 7 years ago
2
Fix display error when plotting PR curve on HPC

#38 ryi06 closed 7 years ago
1
Workflow hierarchy

#37 nickdeveaux closed 7 years ago
3
Update yeast_bbsr_workflow.py

#36 gs512 closed 7 years ago
4
Yeast tutorial

#35 nickdeveaux closed 7 years ago
4
Added the yeast workflow

#34 kostyat closed 7 years ago
2
new functionality for auto-creating default metadata

#33 nickdeveaux closed 7 years ago
2
add blahblah to devnotes primarily to see if the travis build fails

#32 AaronWatters closed 7 years ago
4
Python 3 and relative imports

#31 dayanne-castro opened 8 years ago
4
GS values now positive

#30 dayanne-castro closed 7 years ago
3
Precision-Recall

#29 dayanne-castro closed 8 years ago
0
Refactor design/response into Python

#28 e5c opened 8 years ago
4
design and response shouldn't check names in R since that converts + …

#27 nickdeveaux closed 8 years ago
2
Multitask learning using mix of elementwise and block sparsity

#26 dayanne-castro closed 8 years ago
3
added dayanne's priors and tests

#25 nickdeveaux closed 8 years ago
2
Dayanne priors

#24 nickdeveaux closed 8 years ago
3