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smarco
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WFA2-lib
WFA-lib: Wavefront alignment algorithm library v2
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Dual-cost gap-affine distances with gap opening penalty = 0
#52
RolandFaure
closed
1 year ago
2
Difference between GapAffine(1,1,1) and EditDistance
#51
RolandFaure
closed
1 year ago
2
Tag versionin
#50
tbrekalo
closed
1 year ago
1
Fix bug in the SIMD-accelerated extend (AVX2)
#49
quim0
closed
1 year ago
3
Easily include WFA2-lib from other CMake-based projects
#48
marcelm
closed
1 year ago
3
Retrieving the extent of an alignment
#47
marcelm
opened
1 year ago
0
Do D and I have inverted roles in CIGAR strings?
#46
marcelm
closed
1 year ago
4
CMake: updated install paths and adding missing source code
#45
pjotrp
closed
1 year ago
0
CMake: merge Debian packaging changes - ready to R&R
#44
pjotrp
closed
1 year ago
0
Fixes GNU destination paths, hopefully. See comments https://github.c…
#43
pjotrp
closed
1 year ago
0
CMake updates
#42
pjotrp
closed
1 year ago
0
Add CMake support for building and installing shared lib and static lib
#41
pjotrp
closed
1 year ago
2
Please tag releases
#40
tillea
closed
1 year ago
5
[WFA::Compute] Maximum allocated wavefronts reached
#39
RolandFaure
closed
1 year ago
14
Patching WFA2-lib to prevent C macros from bleeding into the environment
#38
pjotrp
closed
1 year ago
1
How to control the primary orientation of the alignment?
#37
y9c
closed
1 year ago
1
Hamming distance
#36
yunfeiguo
opened
2 years ago
2
WFA2-lib commons.h bleeds C macros
#35
pjotrp
closed
1 year ago
5
wf_aligner->cigar->operations is blank
#34
lpipes
closed
1 year ago
12
Adding -lrt in case "librt.so.1: error adding symbols: DSO missing from command line"
#33
ksahlin
closed
1 year ago
1
Avoid multiple definitions of the `match_function_params`
#32
AndreaGuarracino
closed
2 years ago
0
Implementation of `BiWFλ` (BiWFlambda)
#31
AndreaGuarracino
closed
1 year ago
1
Segmentation Fault with memory_mode != high
#30
h-2
closed
1 year ago
3
Add rust bindings
#29
RagnarGrootKoerkamp
closed
2 years ago
1
Search for $p$ more iterations after finding an overlap
#28
RagnarGrootKoerkamp
closed
2 years ago
1
Alignment with match score not optimal
#26
wongs2
closed
2 years ago
4
Updated Makefile with option BUILD_MINIMAL
#25
kcleal
closed
2 years ago
3
Small typo in WFA paper
#24
RagnarGrootKoerkamp
opened
2 years ago
5
Score is `-INF` when aligning two empty sequences
#23
RagnarGrootKoerkamp
closed
2 years ago
2
Rust bindings and sign of returned score
#22
RagnarGrootKoerkamp
closed
2 years ago
3
Unexpected alignment failures
#21
h-2
closed
2 years ago
5
[questions] benchmarks; scores VS penalties
#20
h-2
closed
2 years ago
3
ends-free match score not used
#19
wongs2
closed
2 years ago
2
how to use extension
#18
brentp
opened
2 years ago
7
left shift of negative value
#17
armintoepfer
opened
2 years ago
1
EXC_BAD_ACCESS
#16
armintoepfer
opened
2 years ago
12
Allow overriding CC CPP variables
#15
Millak
closed
2 years ago
1
gitignore: standard C/C++ ignores, as well as ignore transient build/…
#14
pjotrp
closed
2 years ago
1
Speed up WFA when two sequences differ greatly in length
#13
lh3
opened
2 years ago
3
Feature questions
#12
rmhubley
closed
1 year ago
3
Bug in overloaded WFAligner::alignEndsFree()
#11
maxbbbb
closed
2 years ago
1
Different score for insertion and deletion?
#10
y9c
opened
2 years ago
7
SIMD for extending
#9
RagnarGrootKoerkamp
closed
2 years ago
1
Meet in the middle
#8
RagnarGrootKoerkamp
closed
2 years ago
3
Wrong output for two ~5Mb long sequences
#7
lh3
closed
2 years ago
2
Other Landau-Vishkin implementations
#6
RagnarGrootKoerkamp
closed
2 years ago
12
Some questions on the readme
#5
RagnarGrootKoerkamp
closed
2 years ago
1
Added -fPIC to C_FLAGS and BUILD_CPP option
#4
kcleal
closed
2 years ago
1
Added BUILD_CPP option to Makefile
#3
kcleal
closed
2 years ago
0
Build issue on centos
#2
kcleal
closed
2 years ago
3
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