snakemake snakemake-executor-plugin-slurm issues

snakemake / snakemake-executor-plugin-slurm

A Snakemake executor plugin for submitting jobs to a SLURM cluster

MIT License

18 stars 19 forks source link

issues

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fix: fix path typo

#72 fgvieira closed 7 months ago
0
chore(main): release 0.4.4

#71 github-actions[bot] closed 7 months ago
1
Revert "chore: updated testcase with directory path in wildcards"

#70 johanneskoester closed 7 months ago
0
chore: updated testcase with directory path in wildcards

#69 johanneskoester closed 7 months ago
0
chore(main): release 0.4.3

#68 github-actions[bot] closed 7 months ago
1
fix: always create logdir before sbatch

#67 johanneskoester closed 7 months ago
1
refactor: get cpus_per_task from jobstep executor

#66 johanneskoester closed 7 months ago
3
Determine dynamic resources depending on retry reason?

#65 nikostr opened 7 months ago
5
fix: fixed string for constraints - see issue #58

#64 cmeesters closed 3 months ago
3
"module command not found" using Snakemake with Slurm

#63 kevinrue closed 6 months ago
15
Dynamic runtime resource fails with SLURM

#62 nikostr opened 7 months ago
3
Dynamic determination of queue

#61 johanneskoester opened 7 months ago
3
Incorrect DAG evaluation in jobstep with ruleorder and checkpoint

#60 cademirch closed 7 months ago
8
fix: ensuring setting of job.resources.cpus_per_task

#59 cmeesters closed 7 months ago
0
Constraints that include logical "or" cause Snakemake to hang

#58 w8jcik closed 3 months ago
4
Differences in SLURM command between what Snakemake says it runs and what is actually run

#57 stefmldk opened 7 months ago
8
feat: multicluster

#56 cmeesters closed 3 months ago
9
The benchmark directive does not work when slurm is used as the executor

#55 stefmldk closed 7 months ago
3
TypeError: SpawnedJobArgsFactory.general_args() got an unexpected keyword argument 'executor_common_settings'

#54 Parkerdow closed 8 months ago
4
Missing support for --clusters option

#53 meliamne closed 2 months ago
4
Snakemake 8 not usable with Slurm clusters offering GPUs

#52 w8jcik closed 7 months ago
3
chore(main): release 0.4.2

#51 github-actions[bot] closed 8 months ago
1
main.py: error: argument --executor/-e: invalid choice: 'slurm-jobstep' (choose from 'local', 'dryrun', 'touch')

#50 Carsten-Ke closed 8 months ago
1
fix: adapt to latest snakemake-interface-executor-plugins

#49 johanneskoester closed 8 months ago
0
fix: replace os.path.sep in wildcard strings with "" in logfile name

#48 jaicher closed 7 months ago
0
Directory separator in wildcards not handled in updated logfile names

#47 jaicher closed 7 months ago
3
`--cache` is ignored when using the executor

#46 jlanga closed 2 months ago
6
chore(main): release 0.4.1

#45 github-actions[bot] closed 8 months ago
1
fix: fixes issue #40 - ntasks set explicitly

#44 cmeesters closed 8 months ago
0
chore(main): release 0.4.0

#43 github-actions[bot] closed 8 months ago
1
docs: added mini paragraph about Conda and Env Modules

#42 cmeesters closed 4 months ago
2
Inheriting cpus-per-task in srun (Slurm 22.05+)

#41 paudano closed 7 months ago
7
setting ntasks for non-MPI jobs

#40 tatumdmortimer closed 8 months ago
6
chore(main): release 0.3.2

#39 github-actions[bot] closed 9 months ago
1
Job status query fails if slurm accounting storage is disabled

#38 prs513rosewood opened 9 months ago
4
docs: extended docs

#37 cmeesters closed 9 months ago
1
chore(main): release 0.3.1

#36 github-actions[bot] closed 9 months ago
1
feat: add wildcards to output and comment

#35 Ulthran closed 8 months ago
4
add human job name with wildcards

#34 sravel closed 9 months ago
3
Slurm doesn't exit on completion

#33 Ulthran closed 8 months ago
13
chore(main): release 0.3.0

#32 github-actions[bot] closed 9 months ago
1
chore(main): release 0.2.2

#31 github-actions[bot] closed 9 months ago
1
Usefulness of this plugin

#30 mlarjim closed 8 months ago
5
`sbatch` call does not escape quotes in `exec_job`

#29 ebete opened 9 months ago
15
fix: Typos in documentation

#28 MrSquidward closed 9 months ago
0
feat: support --qos as a resource

#27 kdm9 closed 8 months ago
4
fix: Use sacct syntax that is compatible with slurm < 20.11.0

#26 dnerini closed 9 months ago
4
Plugin is not compatible with older SLURM versions

#25 dnerini closed 9 months ago
0
srun: error: slurm_init_msg_engine_port error Address already in use

#24 y9c closed 9 months ago
3
Conflicting use of arguments for global and workflow specific profiles

#23 TBradley27 closed 9 months ago
3

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