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snayfach
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UHGV
Unified Human Gut Virome Catalog
https://portal.nersc.gov/UHGV
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MCL-Cluster
#74
Xuyang-Feng
closed
4 months ago
1
checkv database version
#73
wen1112
opened
5 months ago
0
taxon_alias
#72
zhixuanyan
opened
7 months ago
0
viral_cluster_info.tsv and genome_taxonomy.tsv in uhgv-db-v0.4
#71
ChaoXianSen
opened
7 months ago
0
representative genomes for vOTUs
#70
ChaoXianSen
opened
7 months ago
0
relationship between species level name and genus level name
#69
ChaoXianSen
opened
7 months ago
0
uhgv-db-v0.4
#68
ChaoXianSen
opened
7 months ago
1
uhgv-tools classify run error
#67
ChaoXianSen
closed
8 months ago
4
how many sequences in the UHGV databae ?
#66
ChaoXianSen
closed
9 months ago
2
The address of this article
#65
qkqk-hub
closed
10 months ago
1
some questions baout result file 'taxon_info.tsv '
#64
ChaoXianSen
closed
11 months ago
2
Error: One or more diamond tasks failed to run
#63
OPeterJ
opened
11 months ago
6
Details on family-level clustering for the UHGV repo
#62
joacjo
opened
1 year ago
0
Phanta implementation and viromes other than the gut?
#61
mhmism
closed
1 year ago
1
Not writing output files but still says 'Success!'
#60
haleyhallowell
closed
1 year ago
2
Cannot download uhgv-toolkit
#59
haleyhallowell
closed
1 year ago
8
Prepare final database for classify tool
#58
snayfach
closed
1 year ago
0
Phanta analysis
#57
snayfach
closed
1 year ago
0
Inconsistent host prediction within viral clusters
#56
snayfach
closed
1 year ago
0
Upload and share results from Tamburini et al.
#55
snayfach
closed
1 year ago
0
Filter out non-viruses
#54
snayfach
closed
1 year ago
1
Metadata files
#53
snayfach
closed
1 year ago
0
Population genomics
#52
snayfach
closed
1 year ago
0
Main figures
#51
snayfach
closed
1 year ago
0
Pathobionts
#50
snayfach
closed
1 year ago
0
Export votu_reps datasets
#49
snayfach
closed
1 year ago
0
Add DGR annotations
#48
snayfach
closed
1 year ago
0
README tracker
#47
snayfach
closed
1 year ago
0
Empty GFF files for many genomes
#46
snayfach
closed
1 year ago
0
Add antiCRISPR annotations
#45
snayfach
closed
1 year ago
0
Add padloc annotations
#44
snayfach
closed
1 year ago
1
Run .chmod script
#43
snayfach
closed
1 year ago
0
Missing proteins for 103 genomes, all mq+
#42
snayfach
closed
1 year ago
1
Genome > Sample > Phenotypes
#39
snayfach
closed
1 year ago
0
Flag outliers in viral clusters using genome size
#38
snayfach
closed
1 year ago
0
Host genomes metadata
#37
snayfach
closed
1 year ago
1
Kmer freq UHGV-2246620
#36
snayfach
closed
1 year ago
1
Lifestyle
#35
snayfach
closed
1 year ago
0
Figure ideas
#34
snayfach
closed
1 year ago
0
Setup Lawrencium
#33
snayfach
closed
1 year ago
0
Display a circular genome to highlight diverse annotations
#32
snayfach
closed
1 year ago
0
Host Range Analysis
#31
snayfach
closed
1 year ago
0
Show expansion relative to input datasets
#30
snayfach
closed
1 year ago
0
Safety profile
#29
snayfach
closed
1 year ago
0
Which genomes used for which analyses
#28
snayfach
closed
1 year ago
0
Add FTP to vOTU table
#27
snayfach
closed
1 year ago
0
Circular genome visualization
#26
snayfach
closed
1 year ago
0
Code for phylogenomic/taxonomic classification of new sequences
#25
snayfach
closed
1 year ago
1
Replace vOTU ids with UHGV ids in FASTA files
#24
snayfach
closed
1 year ago
0
Sketch out Figure 1 dataset overview
#23
snayfach
closed
1 year ago
0
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