spinalcordtoolbox PAM50 issues

spinalcordtoolbox / PAM50

https://github.com/neuropoly/spinalcordtoolbox

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issues

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Update README with recently added labels?

#30 valosekj opened 6 months ago
0
Add `PAM50_rootlets.nii.gz`

#29 valosekj closed 6 months ago
0
Is `PAM50_label_spinal_levels.nii.gz` used?

#28 jcohenadad opened 10 months ago
3
Add cauda equinea label (`60`) to all three point label files for easier lumbar registration

#27 joshuacwnewton closed 10 months ago
3
Add cauda equina label to make lumbar registration more user-friendly

#26 joshuacwnewton closed 10 months ago
6
Modify/Cleanup template files after `PAM50_cord` is updated

#25 jcohenadad opened 11 months ago
0
Answer forum post about C1 level now covered

#24 jcohenadad opened 11 months ago
0
Update WM and GM atlas to match the modified `PAM50_cord.nii.gz` file

#23 jcohenadad opened 11 months ago
0
Inconsistent X-Y location of labels for `PAM50_label_body.nii.gz`

#22 jcohenadad opened 1 year ago
1
Update `PAM50_cord.nii.gz` spinal cord segmentation

#21 jcohenadad closed 11 months ago
8
The spinal cord in `PAM50_cord.nii.gz` is missing the caudal part

#19 jcohenadad closed 11 months ago
0
Update spinal levels based on Frostell et al. paper

#18 jcohenadad closed 10 months ago
3
`PAM50_cord.nii.gz` unecessarily encoded as FLOAT32

#17 jcohenadad closed 11 months ago
0
Update spinal segments using Frostell et al. paper

#16 jcohenadad closed 10 months ago
4
Integration of 7T template (T2s and qT1) + atlas

#14 Nilser3 closed 1 year ago
2
Add 7T T2*w and qT1 in-vivo template + atlas

#13 Nilser3 opened 1 year ago
1
Intervertebral foramen to caudal and rostral rootlets to update spinal levels: limitations

#12 sandrinebedard opened 1 year ago
1
aligning with BIDS

#11 CPernet opened 1 year ago
4
Linear scaling : potentially inaccurate positioning of individual spinal levels

#10 sandrinebedard opened 1 year ago
0
Resample all histological images to 0.2x0.2x0.5 resolution

#9 valosekj closed 1 year ago
0
Histology atlas has inconsistent dimensions

#8 jcohenadad closed 1 year ago
11
Discussion about including the histology atlas in PAM50 upon installation

#7 jcohenadad closed 1 year ago
8
Update the histology template to be aligned with the ICBM152 PAM50

#6 valosekj closed 1 year ago
2
Add unprocessed Phillips Lab PAM50 levels

#5 joshuacwnewton closed 1 year ago
0
Add unprocessed Philips Lab PAM50 levels (outdated w/typo)

#4 joshuacwnewton closed 1 year ago
0
Update spinal levels files generated by the University of Calgary's Phillips Lab based on the Mendez et al. paper

#3 sandrinebedard opened 1 year ago
13
Extend C1 vertebrae on the `PAM50_levels` template file

#20 jcohenadad closed 11 months ago
1
Add microstructure atlas to PAM50

#2 alexfoias closed 2 years ago
1
Migrate PAM50 to pip

#1 kousu opened 3 years ago
1