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stjude
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proteinpaint
Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.
https://proteinpaint.stjude.org/
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Hier cluster missing term type
#1808
congyu-lu
closed
3 weeks ago
0
Support overall survival data from gdc
#1807
xzhou82
closed
3 weeks ago
1
mass app to apply environment-level debug flag at `app.opts.debug:boolean`
#1806
xzhou82
closed
1 week ago
0
gdc sc: clusters from multiple samples can be appended to DEgene dropdown
#1805
xzhou82
closed
2 weeks ago
0
add survival term in gdc dictionary
#1804
xzhou82
closed
3 weeks ago
0
Centralize client-side filter rehydration
#1803
xzhou82
closed
3 weeks ago
0
Added button to open GSEA besides cluster selection
#1802
airenzp
closed
3 weeks ago
0
Migrate genesearch to typescript
#1801
creilly8
closed
3 weeks ago
0
Tentative implementation of gsea inside single-cell GDC app
#1800
robinpaul85
closed
3 weeks ago
0
termsetting: may centralize getDefaultBins() call
#1799
xzhou82
closed
2 weeks ago
1
displayed DE table in the UI
#1798
airenzp
closed
3 weeks ago
2
Numeric violin brushing issue 2
#1797
karishma-gangwani
closed
3 weeks ago
0
hiercluster in matrix refactor not to pretend geneVariant term type
#1796
congyu-lu
closed
3 weeks ago
3
for a scrna experiment, pull its precomputed DE genes and display in app
#1795
xzhou82
closed
3 weeks ago
0
pull singlecell differentially expressed genes from gdc api
#1794
xzhou82
closed
3 weeks ago
0
feat: Support inputing custom CNV segments in mds3 tk, improve cnv re…
#1793
xzhou82
closed
3 weeks ago
0
Fixed click error
#1792
airenzp
closed
4 weeks ago
0
mds3: click on density axis errors out
#1791
xzhou82
closed
4 weeks ago
0
mds3: support custom cnv segments input and improve cnv rendering
#1790
xzhou82
closed
3 weeks ago
0
Defined gdc sc plots on dataset and allowed to hide plots from the UI
#1789
airenzp
closed
4 weeks ago
0
mds3: mayHydrateFilter() breaks by trying to alter frozen filter object
#1788
xzhou82
closed
3 weeks ago
0
Improve termsbyids route
#1787
karishma-gangwani
closed
4 weeks ago
2
Violin integration tests for gene expression terms.
#1786
creilly8
closed
4 weeks ago
0
Misc fixes in sampleView
#1785
airenzp
closed
4 weeks ago
0
More barchart integration tests for gene expression terms
#1784
creilly8
closed
4 weeks ago
0
Single sample will display plots in a two columns layout
#1783
airenzp
closed
4 weeks ago
0
fix the documentation auto-generation
#1782
siosonel
closed
4 weeks ago
0
Update facet table documentation link to the wiki page
#1781
creilly8
closed
4 weeks ago
0
matrix genes menu: at editing a group, move the group selector from secondary menu to primary menu
#1780
xzhou82
opened
4 weeks ago
0
geneset edit ui: click "top mutated" and "top expressed" buttons to show menu with query options
#1779
xzhou82
closed
2 weeks ago
0
deduplicate sample_match_termvaluesetting()?
#1778
xzhou82
opened
1 month ago
0
fix divideBy exp/metabolite term issues
#1777
congyu-lu
closed
4 weeks ago
0
New barchart integration tests for gene expression terms
#1776
creilly8
closed
1 month ago
0
fix: Speed up top variably expressed genes query from gdc api, direct…
#1775
xzhou82
closed
4 weeks ago
2
gdc gene exp: hardcode default bins to cut down 10 seconds from request
#1774
xzhou82
closed
3 weeks ago
1
Improved no gene exp handling. Added clip on overflow to plot div
#1773
airenzp
closed
1 month ago
0
load singlecell gene exp data from R rds files
#1772
xzhou82
closed
1 month ago
0
fix the import of shared/terms
#1771
siosonel
closed
1 month ago
1
New script to retrieve the gene values from rds matrix files
#1770
creilly8
closed
1 month ago
0
Divided by cell type geneexp violin
#1769
airenzp
closed
1 month ago
0
at querying gdc /gene_expression/gene_selection/, pass cohort filter instead of list of cases
#1768
xzhou82
closed
3 weeks ago
1
matrix: sample sorter ui todos and ideas
#1767
xzhou82
opened
1 month ago
0
matrix: term shown in continuous mode to allow to recompute as zscore
#1766
xzhou82
closed
6 days ago
0
Test that scatter tab does or does not appear, as intended
#1765
creilly8
closed
1 month ago
0
wiki: migrate Tracks document
#1764
xzhou82
closed
2 weeks ago
0
matrix: hover/click menu over geneexp/metabolite rows should indicate…
#1763
congyu-lu
closed
1 month ago
1
oncomatrix: declaring geneExpression term in state breaks client code
#1762
xzhou82
closed
1 month ago
1
violin from the single cell gene expression plot
#1761
airenzp
closed
1 month ago
0
fix: At oncomatrix, allow gene expression term to pull data on all cases
#1760
xzhou82
closed
1 month ago
2
oncomatix: gene exp term doesn't show values for all cases when cohort is large
#1759
xzhou82
closed
1 month ago
0
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