This repository contains supplementary code to reproduce the analyses presented in the single-cell integration benchmarking paper. For other parts of the scIB project see these repositories:
Some supplementary results can be viewed on the results website at https://theislab.github.io/scib-reproducibility.
data/ - Data files with benchmarking results used to create figures and the results websitedocs/- The rendered results websitenotebooks/ - Jupyter notebooks used for preparing evaluation datasets and metricsscripts/ - Additional analysis codevisualization/ - Code for generating figures and visualizationswebsite/ - Code for generating the results website