-
Hi, I have some unpaired scRNA-seq and scATAC-seq data, they are sequencing the same samples, but in separate scRNA-seq and scATAC-seq assays, so the cell barcodes are different in these datasets. How…
-
hello,
thanks for this great tool!
![image](https://github.com/MarioniLab/sagenet/assets/13601652/32e240d5-2545-4204-b1f6-a0e202cf720b)
I downloaded the big file sagenet_paper.tar.gz.
The orig…
-
Hello! Our project is currently focused on burst kinetics, and we found your pipeline can estimate kinetic parameters from nonallele-specific scRNA-seq data. We downloaded nnRNA and have successfully …
-
Hello,
I am relatively new in variant calling using scRNA-Seq. I have 17 datasets from 17 patients. I want to call the variants for each patient. I only need the list of variants in each sample.
Can…
-
This is a question about the .table file. I understand that LIGER integrates the scATAC and scRNA-seq. What exactly does this .table contain, and how can I generate it from other pipelines (Seruat, sc…
-
Hello,
Thank you for developing this nice tool.
I'm interested in analyzing allele-specific expression (ASE) in my single-cell RNA-sequencing (scRNA-seq) data. This data comes from offspring tissues…
-
Hello,
I have some clusters with differentially expresses genes generated using Seurat. I also have a highly curated gene list and I wish to perform enrichment analysis using these on each cluster …
-
This issue tracks changes we should implement as noticed during June 2024's Intro scRNA-seq training.
-
Hello
Thank you for developing this great and wel document package.
Wondering if `EnrichmentBrowser` can use scRNA-seq data input? If so, how would you recommend doing this? I am especially wo…
-
xclone.pp.xclonedata currently only supports hg38 and hg19. Can you please also support mm10 for the RDR analysis of mouse scRNA-seq