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Hi guys, I think it is great that a variation of the Persist-seq pseudo-bulk workflow was merged, it took me quite a long time (nearly a year - and still is being improved) to develop it and test it, …
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Hello SPROD author!
Tools like Tangram or gimVI can utilize scRNA-seq data to predict and impute spatial data, but they seem to be unable to denoise contaminated data. Therefore, I am considering u…
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Hi,
I'm currently looking to use scVAEIT to integrate two different datasets, CITE-seq (containing scRNA-seq and protein abundance) and scMultiome (containing scRNA-seq and scATAC-seq). They have …
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Hi,
I got an error probably related to get_cellfracs_seuratv3
> Error in split.default(x = cells.vector, f = ceiling(x = seq_along(along.with = cells.vector)/ncells)) :
It even occurs when…
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The dataset types in the gEAR portal are nice and tidy:
```
mysql> select dtype, count(dtype) from dataset group by dtype;
+-----------------------+--------------+
| dtype | coun…
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### Description of feature
Hi,
I’d like to implement an `auto-detection module` to automatically identify the chemistry type for scRNA-seq libraries. This feature would help address scenarios where …
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Thank you very much for building this wonderful app for analyzing scRNA-seq data. However, recently i cannot connect to the website as well as app via shiny. Could you please solve this problem? Thank…
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Hi, I have some unpaired scRNA-seq and scATAC-seq data, they are sequencing the same samples, but in separate scRNA-seq and scATAC-seq assays, so the cell barcodes are different in these datasets. How…
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Hiya,
Can Arriba be used to detect fusions in single-cell RNAseq data (e.g. Smart-seq2). I expect to see a greater number of false positives compared to bulk RNAseq, and with a lower number of read…
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**Describe the bug**
scRNA Core - Seena, Abby and I noticed when testing the step LRC PBMC Bank --> LRC Bank Seq/Spare that if you try to cancel one of the child tubes, it throws an unhandled excepti…