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theislab
/
scib
Benchmarking analysis of data integration tools
MIT License
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sc.pp.pca -> sc.tl.pca
#319
adamgayoso
opened
2 years ago
0
Incosistent usage of hvg argument in integration.py
#318
adamgayoso
opened
2 years ago
1
add harmony
#317
adamgayoso
closed
1 year ago
2
Update to scvi tools again, also scgen which now uses scvi tools
#316
adamgayoso
closed
2 years ago
9
Set revision for kBET installation
#315
johnarevalo
closed
2 years ago
2
AssertionError: counts is not a valid key in adata.layers
#314
smk5g5
opened
2 years ago
2
pcr when cells per batch is less than 50
#313
jayypaul
closed
2 years ago
1
Add documentation for metrics preprocessing
#312
mumichae
closed
1 year ago
3
Add test for duplicate columns
#311
mumichae
closed
1 year ago
1
Add test for duplicate columns
#310
MxMstrmn
closed
1 year ago
1
Fix scanorama batch reordering
#309
mumichae
closed
2 years ago
1
FileNotFoundError: LISI graph fails at compute_simpson_index_graph
#308
mbuttner
closed
2 years ago
2
Add pre-commit
#307
MxMstrmn
closed
2 years ago
7
Fix duplicate cols scanorama
#306
MxMstrmn
closed
2 years ago
8
Use pre-commit
#305
mumichae
closed
2 years ago
4
Feat/add moransi
#304
MxMstrmn
opened
2 years ago
11
Add metric morans i
#303
MxMstrmn
opened
2 years ago
0
Fix LISI warning error
#302
mumichae
closed
2 years ago
1
Improve LISI multiprocessing specification
#301
mumichae
closed
2 years ago
5
Which type of data `anndata` layers need to comprise to run scib.me.metrics_fast() depending on the integration method used?
#300
antonioggsousa
opened
2 years ago
1
notebook with working tutorial and files
#299
stemangiola
opened
2 years ago
10
Questions about runDESC in the integration part
#298
HelloWorldLTY
opened
2 years ago
1
Addressing installation issues
#297
mumichae
closed
2 years ago
3
README.md AWS silhouette functions
#296
jessicafehlhaber
closed
2 years ago
1
Remove `,` in `bool` var
#295
johnarevalo
closed
2 years ago
2
Update dependency versions
#294
mumichae
closed
2 years ago
2
Questions about the principle of cell cycle conservation
#293
HelloWorldLTY
closed
2 years ago
1
Scanorama overwrites batch column in adata.obs: mismatches between batch information and cell barcode
#292
XuezhenChen
closed
2 years ago
5
Cell_cycle error: svd_solver can not be used with sparse input
#291
XuezhenChen
closed
1 year ago
3
Evaluating batch removal using scIB
#290
XuezhenChen
closed
1 year ago
4
Cannot install scIB - package error
#289
johnjeang
closed
2 years ago
3
Input data without cell annotation
#288
XuezhenChen
closed
2 years ago
2
[WIP] fixed clisi scaling bug
#287
LuckyMD
closed
2 years ago
0
Question about evaluating graph outputs
#286
zhen-he
closed
2 years ago
3
cant find integration methods
#285
krushnapavan9
closed
2 years ago
2
Question about metrics updates
#284
Hrovatin
closed
2 years ago
2
Loosen/unpin numpy and h5py dependency requirements
#283
Zethson
closed
2 years ago
4
Negative cLISi score
#282
Hrovatin
closed
2 years ago
9
Added embed to opt_louvain in metrics function (#277)
#281
lauradmartens
closed
2 years ago
0
package import error in jupyter notebook
#280
myylee
closed
2 years ago
3
Documentation
#279
mumichae
closed
2 years ago
6
Function documentation
#278
lazappi
closed
2 years ago
4
Use of embed in opt_louvain
#277
alitinet
closed
2 years ago
1
runPP with large file fails at `integration_prepare` Rds file conversion.
#276
ilibarra
closed
2 years ago
5
Major package update: Breaks old code
#275
mumichae
closed
2 years ago
0
Add **kwds to be able to access method-specific arguments
#274
gokceneraslan
closed
2 years ago
2
add per batch trajectory score
#273
danielStrobl
closed
2 years ago
5
Packaging
#272
mumichae
closed
2 years ago
0
Question about graph connectivity
#271
HelloWorldLTY
closed
2 years ago
2
Proper kBet test
#270
mumichae
closed
1 year ago
2
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