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theislab
/
scib
Benchmarking analysis of data integration tools
MIT License
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Update highly_variable_genes.py
#269
danielStrobl
closed
2 years ago
2
Check metrics
#268
mumichae
closed
3 years ago
1
Move anndata2ri.activate() up in kBET_single
#267
gokceneraslan
closed
3 years ago
1
Conversion 'py2rpy' not defined for objects of type '<class 'numpy.ndarray'
#266
Hrovatin
closed
3 years ago
6
Refactor metrics
#265
mumichae
closed
3 years ago
9
Check kbet lisi
#264
mbuttner
closed
3 years ago
3
Reimplement ARI
#263
mumichae
closed
3 years ago
1
Check dependies in functions
#262
mumichae
closed
3 years ago
2
Foolproof LISI and kBET
#261
mumichae
closed
3 years ago
0
Check installed methods
#260
mumichae
closed
3 years ago
2
Questions related to scIB metrics
#259
HelloWorldLTY
closed
3 years ago
2
fix missing metrics module
#258
mumichae
closed
3 years ago
6
fix kbet metric
#257
mbuttner
closed
3 years ago
12
Refactor metrics
#256
mumichae
closed
3 years ago
4
Some questions related to metrics here
#255
HelloWorldLTY
closed
3 years ago
1
Catch RootCellError and return score of 0
#254
mumichae
closed
3 years ago
1
Issue with metrics function
#253
axelalmet
closed
3 years ago
5
Allow CSR sparse matrix for PCR
#252
mumichae
closed
3 years ago
0
Fix TI metric
#251
mumichae
closed
3 years ago
0
Update docstring for get_root
#250
mumichae
closed
3 years ago
0
Allow specific pseudotime column for TI metric
#249
mumichae
closed
3 years ago
0
Why I cannot find runSeurat here?
#248
HelloWorldLTY
closed
3 years ago
1
Questions about graph connectivitiy metric
#246
HelloWorldLTY
closed
3 years ago
3
Moran's I as bio conservation metric
#245
Hrovatin
opened
3 years ago
1
Efficient subset of methods/metrics
#244
rogershijin
closed
3 years ago
3
update scanpy and anndata
#243
LuckyMD
closed
3 years ago
0
scanpy requirement bump
#242
LuckyMD
closed
3 years ago
0
Remove redundant cc score code
#241
mumichae
closed
3 years ago
1
Enhancment: any thoughts about including RISC/RPCI
#240
JBreunig
closed
3 years ago
2
scIB-R-integration environment has R version 3.6.1 but Seurat depends on R version >=4.0
#239
rogershijin
closed
3 years ago
2
Overflow in adjusted rank index
#238
alitinet
closed
3 years ago
5
Question about runLIGER method
#237
HelloWorldLTY
closed
3 years ago
1
Is there any tutorial for scIB
#236
HelloWorldLTY
opened
3 years ago
1
Cannot install scIB in colab
#235
HelloWorldLTY
closed
3 years ago
4
add mapping orthologous genes
#234
martaint
closed
3 years ago
2
mapping_mouse_human.txt file
#233
JBreunig
closed
3 years ago
3
Update README.md
#232
danielStrobl
closed
3 years ago
2
Update integration.py
#231
danielStrobl
closed
3 years ago
1
runBBKNN returns None if n_obs in [1e5, 2.5e5]
#230
jamesbaye
closed
3 years ago
5
adding missing ATAC reproducibility notebooks
#229
DaneseAnna
closed
3 years ago
7
env for scib
#228
z5ouyang
closed
3 years ago
12
failed to save seurat "No data in provided assay - counts"
#227
z5ouyang
closed
3 years ago
1
Update to scvi-tools
#226
adamgayoso
closed
2 years ago
4
Update `anndata.concatentation` use in scIB
#225
LuckyMD
closed
3 years ago
0
Remove locked dependencies
#224
danielStrobl
closed
3 years ago
1
Remove method dependencies
#223
danielStrobl
closed
3 years ago
1
scib doesn't install with python 3.8 anymore
#222
danielStrobl
closed
3 years ago
1
make DESC use resolution 1
#221
LuckyMD
closed
3 years ago
1
make desc use res 0.4
#220
LuckyMD
closed
3 years ago
0
Remove redundant cell cycle code
#219
mumichae
closed
3 years ago
1
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