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theislab
/
scib
Benchmarking analysis of data integration tools
MIT License
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Update test_isolated_label.py
#369
danielStrobl
closed
1 year ago
2
Update isolated_labels.py
#368
danielStrobl
closed
1 year ago
5
isolated label scores do not return expected results
#367
danielStrobl
closed
1 year ago
1
`cluster_optimal_resolution()` assumes argument order which can be incorrect for asymmetric metrics
#366
lazappi
closed
1 year ago
1
Missing documentation for `cluster_optimal_resolution()`
#365
lazappi
closed
1 year ago
0
Fix PCA regression error for sparse matrices
#364
mumichae
closed
1 year ago
1
Update integration methods
#363
mumichae
opened
1 year ago
0
Add perfect isolabel ASW test
#362
mumichae
closed
1 year ago
3
Make louvain an optional dependency
#361
mumichae
closed
1 year ago
1
louvain deprecation
#360
deniskristak
closed
1 year ago
3
Add perfect score metric tests for isolated labels
#359
LuckyMD
closed
1 year ago
2
AttributeError: Can only use .cat accessor with a 'category' dtype (when running lisi() metric)
#358
FZ-hajji
closed
1 year ago
3
ilisi_graph error
#357
kostaslazaros
closed
1 year ago
3
Fix sc best practices link
#356
mumichae
closed
1 year ago
1
Preprocessing best practices, scvi wrapper usage, anndata inputs to scib.metrics
#355
dana-mcc
closed
1 year ago
0
add deprecation decorator for asw_batch
#354
mumichae
closed
1 year ago
1
Not really able to import scib
#353
das2000sidd
closed
1 year ago
2
GPU support for scib metrics?
#352
AaronNing
closed
1 year ago
2
`cell_cycle` returns poor scores on perfect data input
#351
scottgigante-immunai
opened
1 year ago
4
Fix kBET import issue
#350
mumichae
closed
1 year ago
3
kBET module not found error is supplanted by an np.nan return
#349
LuckyMD
closed
1 year ago
2
Cannot understand the mean of scib.metrics.pcr_comparison parameter
#348
houruiyan
closed
1 year ago
1
Fix code coverage
#347
mumichae
closed
1 year ago
0
Update louvain to 0.8
#346
scottgigante-immunai
closed
1 year ago
4
Only pass max_epochs to SCVI.train if set
#345
scottgigante-immunai
closed
1 year ago
1
Update trVAE 1.1.2
#344
mumichae
opened
1 year ago
1
General optimised clustering function
#343
mumichae
closed
1 year ago
1
Fix batch silhouette bug
#342
mumichae
closed
1 year ago
1
Running SCIB
#341
hezarfenfly
closed
1 year ago
3
Update louvain call to a more recent method
#340
johnarevalo
closed
1 year ago
2
Make rpy2 and anndata2ri optional
#339
mumichae
closed
1 year ago
4
Rpy2 as optional dependency
#338
mumichae
closed
1 year ago
0
ilisi scores
#337
aissav
closed
1 year ago
1
Missing kBET argument documentation
#336
lazappi
opened
2 years ago
0
Does scgen uses layers.counts or adata.X normalized counts, and where is this indicated?
#335
ilibarra
closed
2 years ago
2
Bump rp2y dependency
#334
mumichae
closed
2 years ago
5
scib.me.ilisi_graph: FileNotFoundError: [Errno 2] No such file or directory: '/tmp/lisi_svo3el2i/graph_lisi_indices_0.txt'
#333
guott15
closed
2 years ago
5
Import scib error "but is an incompatible architecture (have 'x86_64', need 'arm64e" MacOXS Monterrey 12.5.1 with Apple M1 ultra
#332
DRSEI
closed
2 years ago
2
Normalize: could not find function "sizeFactors"
#331
Mari123i
closed
2 years ago
1
error when running fast metrics
#330
littleju714
closed
1 year ago
2
Low values for iLISI score
#329
Mari123i
opened
2 years ago
1
Graph connectivities metric
#328
Chengwei94
closed
2 years ago
1
Fix scanvi bug
#327
mumichae
closed
2 years ago
3
Fix deprecation warning
#326
mumichae
closed
2 years ago
1
Plotting functions
#325
mumichae
opened
2 years ago
6
SCANVI bug
#324
adamgayoso
closed
2 years ago
0
PCR with NaN values in obs
#323
Mari123i
closed
1 year ago
1
Bump rpy2 version?
#322
lazappi
closed
2 years ago
1
scaling per batch, low number of cells
#321
jayypaul
closed
2 years ago
5
Import Error
#320
liujilei156231
closed
2 years ago
0
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