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theislab
/
scib
Benchmarking analysis of data integration tools
MIT License
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Test CCA integration with scib
#419
mairamirza
opened
1 week ago
0
Graph iLISI gives a super low score for well-integrated data
#418
dariotommasini
opened
1 month ago
0
Incosistent usage of adata.copy() argument in integration.py
#417
vondoRishi
opened
1 month ago
0
export the benchmarking table resuls as pdf
#416
mohamednhassan
opened
1 month ago
0
Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows
#415
dependabot[bot]
opened
1 month ago
0
Fix lint
#414
mumichae
closed
2 months ago
0
Lisi Installation Failed
#413
srupendra
opened
2 months ago
1
kBET metrics does not work with scipy==1.14.0
#412
kollo97
opened
2 months ago
1
Computing Metrics on Seurat Objects
#411
VishD17
opened
3 months ago
0
M.A might not be available, you should use M.toarray()
#410
Zhongzheng99
closed
2 months ago
2
Update python-igraph dependency to igraph
#409
szhorvat
closed
2 months ago
0
Optimise PC regression
#408
mumichae
opened
5 months ago
1
Update codecov with token
#407
mumichae
closed
5 months ago
0
Use precomputed clustering
#406
mumichae
closed
5 months ago
1
Use `scib.cl.cluster_optimal_resolution` in metrics wrapper
#405
mumichae
closed
5 months ago
1
Fix argument deprecation
#404
mumichae
closed
6 months ago
1
support scanpy 1.10
#403
martinkim0
closed
6 months ago
2
Ensure essential packages are not detached!
#402
zhongzheng1999
closed
2 months ago
0
scib import failure with scanpy 1.10.0
#401
mmdanziger
closed
6 months ago
2
scib.metrics.metrics returns all NaN
#400
Jiayi-Zheng
opened
6 months ago
0
why the "Unable to allocate 121. GiB for an array with shape (26734, 606219) and data type float64 every time I run "scib.integration.combat(adata, batch= "sample")"
#399
NicoNiCoN11
closed
6 months ago
1
where can i download the benchmarking data ？ Please
#398
noob000007
closed
6 months ago
1
Can "Scib" evaluate the integration functionality of Seurat v5 ?
#397
zhangmiaomiao379
opened
8 months ago
0
Update dependencies
#396
mumichae
closed
9 months ago
1
Refactor LISI metrics
#395
mumichae
closed
5 months ago
1
Skip labels before loop
#394
johnarevalo
closed
2 months ago
3
Question on Benchmarking Cell Type Assignments Post-Integration and Concerns about Bias in Results
#393
MariaRosariaNucera
opened
9 months ago
2
mertric about ASW
#392
BillyChen123
opened
10 months ago
0
Questions about the weighted score design of scIB
#391
HelloWorldLTY
opened
10 months ago
1
fix: check file empty
#390
chyroc
closed
9 months ago
1
use_rep in cluster_optimal_resolution and opt_louvain
#389
kzkedzierska
opened
11 months ago
0
AttributeError: can't set attribute 'categories'
#388
BillyChen123
opened
11 months ago
0
how to merge and integrate the TPM and raw counts matrix data
#387
Teich2233
opened
1 year ago
1
No such file or directory: '/tmp/lisi_gtjq4lmu/graph_lisi_indices_0.txt'
#386
BillyChen123
closed
6 months ago
2
Running scib.metrics.metrics() produces dataframe of NaNs
#385
EvanDMee
opened
1 year ago
1
Comparing metrics from different embeddings
#384
samfenske
opened
1 year ago
0
Possibility to report the cLISI score for each cluster?
#383
auesro
opened
1 year ago
0
scanorama does not subset to HVG list
#382
mbuttner
opened
1 year ago
1
provide number of columns to `pd.read_table`
#381
johnarevalo
closed
1 year ago
1
Set names when reading LISI CSV files
#380
lazappi
closed
1 year ago
1
Metrics fail when there are unused labels
#379
lazappi
opened
1 year ago
1
Question on publicly available reprocessed datasets
#378
kostaslazaros
closed
1 year ago
1
more readable PCA computation and info retrieval
#377
mumichae
closed
1 year ago
1
Error reading LISI index file
#376
lazappi
closed
1 year ago
2
FileNotFoundError when running ilisi metric
#375
katelynxli
closed
1 year ago
3
Error runing LISI when reading index file
#374
HelloWorldLTY
closed
1 year ago
5
Update documentation clustering
#373
mumichae
closed
1 year ago
1
Add GPU_id param for DESC
#372
johnarevalo
closed
1 year ago
1
Scale isolated label ASW
#371
mumichae
closed
1 year ago
2
Run iso label as discussed on friday
#370
danielStrobl
closed
1 year ago
1
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