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theislab
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scvelo
RNA Velocity generalized through dynamical modeling
https://scvelo.org
BSD 3-Clause "New" or "Revised" License
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Remove numpy<2.0.0 pin
#1267
WeilerP
closed
5 days ago
0
error in tl.paga: Invalid vertex ID
#1266
sokratiag
opened
1 month ago
1
NaN in velocity_umap
#1265
wahdeeyau
opened
1 month ago
0
scv.tl.recover_dynamics() IndexError: list index out of range
#1264
AAA-3
closed
1 month ago
2
Update densifying sparse array
#1263
WeilerP
closed
1 month ago
0
Fix iteration over Pandas Series
#1262
WeilerP
closed
1 month ago
0
Metabolic labeling inference fails with latest Pandas
#1261
WeilerP
closed
1 month ago
0
error from scv.pp.moments(adata)
#1260
QiqiGuo1996
closed
1 month ago
4
Question on normalisation
#1259
miktrinh
opened
2 months ago
0
UMAP coordinates not transfering from Seurat
#1258
MeganRMonaghan
closed
2 months ago
1
A task has failed to un-serialize. Please ensure that the arguments of the function are all picklable.
#1257
christophechu
closed
2 months ago
1
Fix/print versions
#1256
Oisin-M
opened
2 months ago
0
Dependency problem on packages optax & chex
#1255
jasonleongbio
closed
2 months ago
1
can scvelo compare normal and diseased ( different stages)? why unspliced are more than spliced?
#1254
Flu09
closed
2 months ago
0
Shape of phase plot(U-S) changes after scv.pp.moments(adata)
#1253
yuzzini
closed
2 months ago
1
Update `utils.py`
#1252
WeilerP
closed
2 months ago
0
Import error with `numpy>=2.0`
#1251
WeilerP
closed
2 months ago
0
Significant cell count reduction after merging loom files with scvelo.merge
#1249
mayurdoke6
closed
2 months ago
1
Significant cell count reduction after merging loom files with scvelo.merge
#1248
mayurdoke6
closed
2 months ago
1
Export the neighbor graph from integrated Seurat objective and import to scvelo
#1245
Alvis-Jiang
closed
3 months ago
0
Velocyto in sc-RNAseq coupled TCRseq on 5'
#1244
Baldosisley
closed
2 months ago
0
scv.tl.velocity_graph(adata) has bug that it can't be run
#1243
rabbitpang
closed
4 months ago
1
scv.read(adata.h5ad) does not load spliced and unspliced layers
#1242
mdu4003
closed
4 months ago
3
scv.tl.paga
#1241
hvgogogo
opened
4 months ago
4
AttributeError: module 'scvelo' has no attribute 'pp'
#1240
Kalpi-ds
closed
4 months ago
1
More information about scvelo.datasets
#1239
mortunco
closed
4 months ago
1
scv.pl.proportions() -- "axis 1 is out of bounds for array of dimension 1"
#1237
Alvis-Jiang
opened
4 months ago
0
an error in failing to save stream figures aftering installing some packages like "mpi4py petsc petsc4py"
#1236
Shiywa
opened
4 months ago
0
TypeError: Neighbors.compute_neighbors() got an unexpected keyword argument 'write_knn_indices'.
#1235
cnwokolo24
closed
4 months ago
4
Make progress bar optional
#1234
WeilerP
closed
4 months ago
0
Fix neighbors calculation
#1233
WeilerP
closed
4 months ago
0
AttributeError: module 'scvelo' has no attribute 'DataFrame'
#1232
jwalewski
closed
4 months ago
1
Fix/get df with default args
#1231
Oisin-M
closed
4 months ago
1
Fix/compute_neighbors, issue #1212
#1229
Abelgurung
closed
4 months ago
1
add VELOVI preprocess methods
#1228
martinkim0
opened
5 months ago
1
cannot use module of scvelo after import in Spyder
#1227
yulchen810
closed
5 months ago
1
Update `pyproject.toml`
#1226
WeilerP
closed
5 months ago
0
Setuptools incorrectly set up
#1225
WeilerP
closed
5 months ago
0
Update `pyptoject.toml`
#1224
WeilerP
closed
5 months ago
0
scvelo release version is hard coded
#1223
WeilerP
closed
5 months ago
0
Remove `debug.py`
#1222
WeilerP
closed
5 months ago
0
Update `release.yml`
#1221
WeilerP
closed
5 months ago
0
Build not installed in release CI
#1220
WeilerP
closed
5 months ago
0
Update `VELOVI::train`
#1219
WeilerP
closed
5 months ago
0
Outdated `use_gpu` argument for VELOVI.train
#1218
WeilerP
closed
5 months ago
0
Update `plotting/utils.py::hist`
#1217
WeilerP
closed
5 months ago
0
Unable to import scvelo
#1216
jjia1
closed
5 months ago
2
Need help with the parsing of stream plot result
#1215
NikTuzov
closed
5 months ago
1
Too many dependencies are being installed
#1214
LouisFaure
closed
6 months ago
2
Neighbors.compute_neighbors() got an unexpected keyword argument 'write_knn_indices'
#1212
akhst7
closed
4 months ago
7
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