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thkuo
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seq2geno
Computational pipeline for genomic features of bacterial population
GNU General Public License v3.0
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update INSTALL.sh
#61
thkuo
closed
3 years ago
0
install Roary dependencies
#60
thkuo
closed
3 years ago
0
merge from hzi-bifo
#59
thkuo
closed
3 years ago
0
Genyml file generator
#58
thkuo
closed
3 years ago
0
reads compression
#57
thkuo
closed
3 years ago
0
version control of prokka
#56
thkuo
opened
5 years ago
0
README updates
#55
thkuo
closed
5 years ago
0
Windows style newline characters in the old scripts
#54
thkuo
closed
5 years ago
0
create genml
#53
thkuo
closed
4 years ago
1
loading the main environment
#52
thkuo
closed
5 years ago
1
Division and collaboration
#51
thkuo
closed
3 years ago
2
DESeq2 input
#50
thkuo
closed
5 years ago
1
rules about phenotype table
#49
thkuo
opened
5 years ago
0
functions about file validation
#48
thkuo
closed
3 years ago
0
user options
#47
thkuo
closed
3 years ago
1
dryrun
#46
thkuo
closed
3 years ago
0
synonymous mutation detection
#45
thkuo
opened
6 years ago
0
create submodules
#44
thkuo
closed
5 years ago
0
freebayes with multiple samples
#43
thkuo
opened
6 years ago
1
id-dependent methods fail in case of duplicated ids in gbk
#42
thkuo
opened
6 years ago
0
samples table
#41
thkuo
closed
5 years ago
1
flexible about reads layout
#40
thkuo
closed
5 years ago
1
process reads and mapping results
#39
thkuo
opened
6 years ago
0
path parsing
#38
thkuo
opened
6 years ago
0
feature reduction
#37
thkuo
closed
5 years ago
0
rules about feature tables
#36
thkuo
opened
6 years ago
0
freebayes
#35
thkuo
closed
6 years ago
1
more functions to include
#34
thkuo
closed
5 years ago
0
check reference genome
#33
thkuo
opened
6 years ago
0
errors when opening reference annotation
#32
thkuo
opened
6 years ago
2
load the local environment
#31
thkuo
opened
6 years ago
3
Parsing reference annotation file
#30
thkuo
opened
6 years ago
0
counting the coverage
#29
thkuo
opened
6 years ago
0
use bcftools
#28
thkuo
closed
6 years ago
1
the indel table
#27
thkuo
opened
6 years ago
4
roary
#26
thkuo
opened
6 years ago
2
Lambda, expand, and wildcards
#25
thkuo
opened
6 years ago
0
Wildcards independent from the output filenames
#24
thkuo
opened
6 years ago
1
software choices
#23
thkuo
opened
6 years ago
0
Workflow independence
#22
thkuo
opened
6 years ago
1
The input to Geno2Pheno
#21
thkuo
closed
5 years ago
1
format commands
#20
thkuo
closed
6 years ago
1
wildcards problem
#19
thkuo
opened
6 years ago
4
dirty but executable version
#18
thkuo
closed
6 years ago
0
stampy
#17
thkuo
closed
5 years ago
2
the environment
#16
thkuo
closed
5 years ago
3
legal characters
#15
thkuo
closed
6 years ago
3
roary usage
#14
thkuo
opened
6 years ago
2
software outputs
#13
thkuo
opened
6 years ago
1
remove redundant scripts
#12
thkuo
opened
6 years ago
0
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