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thpar
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diffany
Diffany is an open-source toolbox for calculating and visualizing differential networks.
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EdgeComparison
#211
diffany-admin
opened
9 years ago
0
[CLOSED] revise Node ID
#210
diffany-admin
closed
9 years ago
0
[CLOSED] Big networks make Cytoscape grind to a halt
#209
diffany-admin
closed
9 years ago
4
[CLOSED] make sample of osmotic use-case data
#208
diffany-admin
closed
9 years ago
6
[CLOSED] Stream input
#207
diffany-admin
closed
9 years ago
0
[CLOSED] Network cleaning
#206
diffany-admin
closed
9 years ago
0
[CLOSED] Test other pairwise osmotic networks
#205
diffany-admin
closed
9 years ago
2
[CLOSED] optional second DE seed set
#204
diffany-admin
closed
9 years ago
0
[CLOSED] check virtual edge bug
#203
diffany-admin
closed
9 years ago
3
[CLOSED] node visualisation inconsistent
#202
diffany-admin
closed
9 years ago
0
[CLOSED] edge weight inhibition
#201
diffany-admin
closed
9 years ago
1
[CLOSED] visualisation of node attributes
#200
diffany-admin
closed
9 years ago
8
[CLOSED] resolve to one
#199
diffany-admin
closed
9 years ago
2
[CLOSED] generic node attributes
#198
diffany-admin
closed
9 years ago
2
[CLOSED] data update
#197
diffany-admin
closed
9 years ago
3
[CLOSED] filtering of interaction types
#196
diffany-admin
closed
9 years ago
8
[CLOSED] Encode DE in nodes
#195
diffany-admin
closed
9 years ago
7
[CLOSED] Check edge construction from expression data
#194
diffany-admin
closed
9 years ago
1
[CLOSED] progress continuous across tasks
#193
diffany-admin
closed
9 years ago
4
[CLOSED] filter PPI hubs
#192
diffany-admin
closed
9 years ago
3
[CLOSED] osmotic usecase as cytoscape example
#191
diffany-admin
closed
9 years ago
21
[CLOSED] inspect regulatory diff connections
#190
diffany-admin
closed
9 years ago
3
[CLOSED] clean input before writing
#189
diffany-admin
closed
9 years ago
3
cleaning of networks could be faster?
#188
diffany-admin
opened
9 years ago
0
[CLOSED] input cleaning from cytoscape
#187
diffany-admin
closed
9 years ago
0
[CLOSED] check diff calculation
#186
diffany-admin
closed
9 years ago
0
negative fold change values
#185
diffany-admin
opened
9 years ago
2
[CLOSED] condition-specific osmotic networks
#184
diffany-admin
closed
9 years ago
1
[CLOSED] unique node ids and nodemapper object
#183
diffany-admin
closed
9 years ago
2
[CLOSED] node-centric network construction
#182
diffany-admin
closed
9 years ago
2
[CLOSED] clean up "usecase" package
#181
diffany-admin
closed
9 years ago
3
[CLOSED] NetworkConstruction clean up code
#180
diffany-admin
closed
9 years ago
1
add text mining data to osmotic use-case
#179
diffany-admin
opened
9 years ago
0
[CLOSED] Diff fuzzy
#178
diffany-admin
closed
9 years ago
0
[CLOSED] unify overlap cutoffs
#177
diffany-admin
closed
9 years ago
1
[CLOSED] add junit test for fuzzy differential
#176
diffany-admin
closed
9 years ago
0
maxOperator in differential networks
#175
diffany-admin
opened
9 years ago
1
[CLOSED] rename overlap to consensus
#174
diffany-admin
closed
9 years ago
2
[CLOSED] negated condition edge in differential calculation
#173
diffany-admin
closed
9 years ago
1
[CLOSED] Publication
#172
diffany-admin
closed
9 years ago
0
[CLOSED] overlap percentage check
#171
diffany-admin
closed
9 years ago
0
[CLOSED] test fuzzy with reference
#170
diffany-admin
closed
9 years ago
0
[CLOSED] meta and normal networks
#169
diffany-admin
closed
9 years ago
1
[CLOSED] Fuzzy JUnit failures
#168
diffany-admin
closed
9 years ago
2
[CLOSED] ID uniqueness
#167
diffany-admin
closed
9 years ago
1
[CLOSED] store overlap % as edge property
#166
diffany-admin
closed
9 years ago
2
[CLOSED] Impl fuzzy
#165
diffany-admin
closed
9 years ago
0
[CLOSED] minOperator checkbox
#164
diffany-admin
closed
9 years ago
3
[CLOSED] test minOperator functionality
#163
diffany-admin
closed
9 years ago
0
[CLOSED] Percentage of differential edges
#162
diffany-admin
closed
9 years ago
5
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