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tkzeng
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Pangolin
Pangolin is a deep-learning method for predicting splice site strengths.
GNU General Public License v3.0
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Pangolin exits with error if variant with wildcard character
#26
tsivaarumugam
opened
2 days ago
0
WARNING, skipping variant: Variant not contained in a gene body. Do GTF/FASTA chromosome names match?
#25
GEsti124
opened
3 weeks ago
0
remove some files that were probably committed in error
#24
bpow
opened
1 month ago
0
Remove biopython references
#23
bpow
opened
1 month ago
0
Inconsistency of predictions depending on batch size
#22
neverov-am
opened
2 months ago
0
Fixes issue tkzeng/Pangolin#13
#21
tejas-j
opened
3 months ago
1
System/server configuration recommendation for running WGS sample with Pangolin
#20
tsivaarumugam
opened
3 months ago
0
Remove PyVCF dependency
#19
kkchau
opened
3 months ago
1
training code for Pangolin?
#18
carmelle-cat
closed
3 months ago
2
error while running the pangolin script
#17
sruthisrini
opened
5 months ago
0
Suggestion for alternative output/VEP plugin?
#16
jessicakan789
opened
5 months ago
1
Minscores & Maxscores value?
#15
H1baxali
opened
5 months ago
0
Dependency Versions
#14
MartGro
opened
11 months ago
0
Error for some variants
#13
Bin-Guan
closed
9 months ago
5
Reference genome mismatch due to lowercase sequence
#12
gabrielle-y
opened
1 year ago
1
Possible to provide an hg38 genome wide score file?
#11
Bin-Guan
opened
1 year ago
1
Could pangolin predict the splice site ab initio?
#10
permia
opened
1 year ago
1
Update format of annotation according to VCF specification
#9
kkchau
closed
1 year ago
1
Update setup.py to expose scripts/* as CLI entrypoints.
#8
kkchau
closed
1 year ago
0
missing 1 required positional argument: 'type_code'
#7
astulaaa
opened
1 year ago
4
Prediction of 5'ss usage and 3'ss usage
#6
Witiy
opened
1 year ago
1
Error running pangolin with vcf files
#5
PedroBarbosa
closed
1 year ago
2
interpretation of pangolin results
#4
MiqG
closed
2 years ago
3
Problems predicting positive scores
#3
pablo-baeza
closed
2 years ago
2
WARNING, skipping variant: Variant not contained in a gene body. Do GTF/FASTA chromosome names match?
#2
pablo-baeza
closed
2 years ago
4
Merge dev
#1
tkzeng
closed
2 years ago
0