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tleonardi
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nanocompore
RNA modifications detection from Nanopore dRNA-Seq data
https://nanocompore.rna.rocks
GNU General Public License v3.0
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Reducing Travis running time
#75
tleonardi
closed
5 years ago
0
Added travis badge to the README
#74
tleonardi
closed
5 years ago
0
Fixes to Travis testing
#73
tleonardi
closed
5 years ago
0
Travis
#72
tleonardi
closed
5 years ago
0
Fixed issue #68
#71
tleonardi
closed
5 years ago
0
Test and doc continuous Integration
#70
a-slide
closed
5 years ago
6
Downsample to the same coverage as the lower coverage sample
#69
tleonardi
opened
5 years ago
2
Not enough p-values
#68
tleonardi
closed
5 years ago
2
Fixed bug in handling txComp's random state
#67
tleonardi
closed
5 years ago
0
Doc
#66
a-slide
closed
5 years ago
0
Integration tests now check correctness of SampComp results
#65
tleonardi
closed
5 years ago
1
Adrien fixes
#64
a-slide
closed
5 years ago
0
Short ref transcript: NanocomporeError: Not enough p-values for a context of order 2
#63
lucapandolfini
closed
5 years ago
1
Large nanopolishComp .tsv files. Compressed/binary files?
#62
lucapandolfini
closed
4 years ago
5
Error in SampComDB when using sequence_context in SampComp
#61
a-slide
closed
5 years ago
1
Missing GMM pvalues in plot_pvalue
#60
a-slide
closed
5 years ago
1
Replicates have to be named differently
#59
a-slide
closed
5 years ago
3
Unexposed log_dwell options
#58
tleonardi
closed
5 years ago
5
Simplify input datasets in CLI
#57
a-slide
closed
5 years ago
1
Add tests for correct handling of 0 within group variance
#56
tleonardi
closed
5 years ago
0
SampCompDB.save_report() broken in TxCompare_refactor
#55
tleonardi
closed
5 years ago
0
Tx compare refactor
#54
tleonardi
closed
5 years ago
1
Simulator
#53
a-slide
closed
5 years ago
0
Simulator cli
#52
a-slide
closed
5 years ago
0
Should fix import without bed
#51
tleonardi
closed
5 years ago
2
Logit always reports counts of 0 for condition 2 cluster 2
#50
tleonardi
closed
5 years ago
0
Bedparse from the CLI doesn't create BED files
#49
tleonardi
closed
5 years ago
0
Testing on artificial data
#48
tleonardi
closed
5 years ago
1
Data simulator
#47
a-slide
closed
5 years ago
1
Error when SampCompDB is run without a BED file
#46
tleonardi
closed
5 years ago
5
NameError: name 'tests' is not defined
#45
tleonardi
closed
5 years ago
2
Merge various changes and improvements
#44
tleonardi
closed
5 years ago
0
RuntimeWarning: overflow encountered in true_divide
#43
lucapandolfini
closed
5 years ago
1
Rename gmm_method_anova=True
#42
tleonardi
closed
5 years ago
0
multipletests and NaN
#41
tleonardi
closed
5 years ago
0
Invalid kmer tally
#40
a-slide
closed
5 years ago
0
nanocompore_results is unsorted (?)
#39
lucapandolfini
closed
5 years ago
2
Error when running without BED
#38
lucapandolfini
closed
5 years ago
0
Nanopolish discarded reads
#37
lucapandolfini
closed
4 years ago
4
Add option to scale coverage
#36
tleonardi
closed
5 years ago
0
SampCompDB.__get_ref_data()
#35
tleonardi
closed
5 years ago
1
Option to plot bars in plot_pvalue()
#34
tleonardi
closed
5 years ago
0
Add detailed tabular reports
#33
tleonardi
closed
5 years ago
1
Add reporting/plotting for missing positions
#32
tleonardi
closed
5 years ago
5
SampCompDB results()
#31
tleonardi
closed
5 years ago
0
Artificial data generator
#30
tleonardi
closed
5 years ago
5
Replicates
#29
tleonardi
closed
5 years ago
1
Is order 2 the best GMM?
#28
tleonardi
closed
5 years ago
1
CLI is broken
#27
tleonardi
closed
5 years ago
1
Add GMM model plotting to plot_position()
#26
tleonardi
closed
5 years ago
0
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