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hyphy
HyPhy: Hypothesis testing using Phylogenies
http://www.hyphy.org
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Protein sequence wrongly identified as DNA
#1574
gavinmdouglas
closed
1 year ago
4
Getting gene wide dN and dS values
#1573
ElizabethRobbins
closed
1 year ago
4
Compile error #1564 persists in version 2.4.47 (Ubuntu 20.04.5)
#1572
mjeltsch
closed
1 year ago
4
Help with FUBAR Json
#1571
raufs
closed
1 year ago
2
Question About BUSTED Omega Rate Class & Synonymous Rate Class
#1570
gykoh
closed
1 year ago
2
Using FUBAR cache to resume a stalled run?
#1569
hayleyjaywilson
closed
1 year ago
9
Question about running GARD on commandline
#1568
raufs
closed
1 year ago
3
Error Message - Data Format Issues
#1567
clairelavergne
closed
1 year ago
2
Remove .DS_Store
#1566
fd00
closed
1 year ago
0
Unfinished Nex file from GARD
#1565
Daniyalprime
closed
1 year ago
6
Compile error
#1564
ArtPoon
closed
1 year ago
4
Error:Matrix/List LHS expected but not supplied
#1563
biozhajie
closed
1 year ago
8
Cannot Parallelize - Segmentation fault with parallel or openMPI
#1562
NicMAlexandre
closed
1 year ago
7
Hyphy Command Line Error
#1561
NicMAlexandre
closed
1 year ago
0
Interpreting 0 values in aBSREL results
#1560
skaul31
closed
1 year ago
4
Datamonkey segmentation fault (11)
#1559
DeondeJager
closed
1 year ago
2
Questions oabout RELAX
#1558
Xiaojun928
closed
1 year ago
3
Resolve issue #1555
#1557
spond
closed
1 year ago
0
Create cmake.yml
#1556
stevenweaver
closed
1 year ago
2
Segmentation faults running tests on FreeBSD
#1555
Jehops
closed
1 year ago
3
2.5.46
#1554
spond
closed
1 year ago
0
CMake fixes and a few more speed tweaks.
#1553
spond
closed
1 year ago
0
2.5.45 speed improvements
#1552
spond
closed
1 year ago
0
Problems with different output results
#1551
530NLZ
closed
1 year ago
6
what is difference between local and global in FitMG94?
#1550
jzhan6
closed
1 year ago
4
Bug fixes
#1549
spond
closed
1 year ago
0
Question About HyPhy
#1548
gykoh
closed
1 year ago
2
Add CodeQL workflow for GitHub code scanning
#1547
lgtm-com[bot]
closed
1 year ago
0
hyphy relax Command line
#1546
liangjiameng
closed
1 year ago
7
Phylogenetic tree change when submit to BUSTED
#1545
ebrassea
closed
1 year ago
5
FADE cannot recognize my tree file
#1544
HY-Zeng
closed
1 year ago
2
Decoding internal branches from RELAX's JSON output
#1543
mchaney1
closed
1 year ago
3
aBSREL: acceptable distribution of foreground branches
#1542
Emilyaoc
closed
1 year ago
11
aBSREL: when to select 'Leaves' versus 'All'
#1541
Emilyaoc
closed
1 year ago
1
Ambiguous nucleotides as input for Hyphy positive selection
#1540
psorigue
closed
1 year ago
2
Can not run GARD results
#1539
VeterinaryLi
closed
1 year ago
4
Cannot install hyphy-develop / hyphy-analyses
#1538
hayleyjaywilson
closed
1 year ago
2
aBSREL output empty
#1537
psorigue
closed
1 year ago
5
how to calculate the dN/dS for a orthologus gene family ?
#1536
yayahoho1
closed
1 year ago
2
Anyway to calculate omega for each branch of the tree?
#1535
jzhan6
closed
1 year ago
6
[GARD] Recombination on a sliding windows
#1534
francicco
closed
1 year ago
5
Nodal equivalency across gene phylogenies against the backdrop of a species phylogeny?
#1533
RijanHasTwoEars7
closed
1 year ago
6
aBSREL run error
#1532
luisasegovia
closed
1 year ago
10
Can BGM compare the specified branches (foreground) against the Background branches as done in BUSTED?
#1531
Enhancer01
closed
1 year ago
6
dataset with mixed code tables
#1530
dongzhang0725
closed
1 year ago
17
2 tests fail
#1529
yurivict
closed
1 year ago
11
Tests fail in outsource build
#1528
yurivict
closed
1 year ago
2
BGM results showing constant sites are co-evolving
#1527
ElizabethRobbins
closed
1 year ago
2
Instant error on all jobs
#1526
eibnerg
closed
1 year ago
3
RELAX runing wrong
#1525
mumu520520
closed
1 year ago
2
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