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hyphy
HyPhy: Hypothesis testing using Phylogenies
http://www.hyphy.org
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error displaying FEL results
#1621
KVDlab
closed
10 months ago
3
Contrast-FEL Error
#1620
Cayna26
closed
10 months ago
5
How to include srv in absrel
#1619
Emilyaoc
closed
10 months ago
6
Convergence Issue With FEL
#1618
gykoh
closed
10 months ago
9
Cannot visualise FUBAR results in hyphy-vision
#1617
jaiganeshjg
closed
1 year ago
1
Difference between --reference-group and --reference flag (RELAX)
#1616
liamfriar
closed
1 year ago
1
BUSTED incorrectly finding internal STOP codons
#1615
liamfriar
closed
11 months ago
4
RELAX Internal Error: Likelihood function evaluation & ComputeTreeBlockByBranch
#1614
philsteinberg
closed
10 months ago
4
MEME equivalent to FEL-contrast?
#1613
Emilyaoc
closed
8 months ago
18
How to handle likely codon bias in test clade (endosymbionts)
#1612
liamfriar
closed
10 months ago
4
Trying to interpret RELAX results
#1611
liamfriar
closed
10 months ago
3
Error: Internal error in ComputeBranchCache
#1610
noobcoder04
closed
9 months ago
7
Removing SWIG from CMake
#1609
spond
closed
1 year ago
0
2.5.51
#1608
spond
closed
1 year ago
0
The non-synonymous/synonymous rate ratio for test in datamonky represents the dn-ds of the entire gene ?
#1607
douluojiaofu
closed
11 months ago
3
GARD Internal error in _LikelihoodFunction::GradientLocateTheBump
#1606
morggen13
closed
12 months ago
4
Problems using GARD output
#1605
jananiharan
closed
1 year ago
2
HyPhy-GUI desktop application - analyses with >2000 sequences
#1604
vanessacpmcorreia
closed
11 months ago
9
Specifying foreground and interpret results
#1603
chenyangkang
closed
1 year ago
3
How to specify thread use
#1602
chenyangkang
closed
1 year ago
2
command line arguments saved to json?
#1601
dcaffrey
closed
1 year ago
3
adding notes about CLI usage
#1600
andrewkern
closed
1 year ago
0
Error: not a valid variable identifier in call to FindRoot(models.generic.SetBranchLength.t,
#1599
eiverso
closed
1 year ago
2
command line interface
#1598
andrewkern
closed
1 year ago
5
Can't specify subset branches
#1597
chenyangkang
closed
1 year ago
1
Using GARD output for BUSTED/other analysis
#1596
jananiharan
closed
1 year ago
4
RELAX: determining if a shift in selection intensity is driven more by changes in positive or purifying selection
#1595
mbarkdull
closed
1 year ago
2
GARD Internal error in _LikelihoodFunction::ConjugateGradientDescent
#1594
tbigot
closed
11 months ago
5
How to choose a model
#1593
Caiguoyu
closed
1 year ago
1
Result visualization error
#1592
Caiguoyu
closed
10 months ago
14
Internal error when running RELAX
#1591
dongzhang0725
closed
1 year ago
4
Issue with CleanStopCodons.bf: Incompatible matrix dimensions in call to CheckDimension: 1x64 and 8000x1
#1590
mbarkdull
closed
1 year ago
3
Question about P[dN/dS<1]<0
#1589
douluojiaofu
closed
1 year ago
5
Issues with install
#1588
wbender1
closed
1 year ago
4
DataMonkey Server issue
#1586
Leki-10
closed
1 year ago
1
FEL test failing - hyphy 2.5.49 on FreeBSD
#1585
Jehops
closed
1 year ago
4
Contrast-FEL error message
#1584
KatDKeith
closed
1 year ago
4
Datamonkey: FEL figure1 = RuntimeError: Cannot read properties of undefined (reading '0')
#1583
eibnerg
closed
1 year ago
6
HyPhy Vision fails to open aBSREL output .json file
#1582
madeleineaaseremedios
closed
1 year ago
3
Convergence issue with RELAX
#1581
shenglin-liu
closed
1 year ago
1
2.5.49 bug fixes
#1580
spond
closed
1 year ago
0
Selection analysis input tree
#1579
filonico
closed
1 year ago
2
BUSTED outfiles vs Hyphy Vision Data
#1578
bob100077
closed
1 year ago
2
RELAX not running on HyPhy 2.5.8
#1577
philippaSteinberg
closed
1 year ago
16
batch use hyphy
#1576
hrluo93
closed
1 year ago
4
2.5.48
#1575
spond
closed
1 year ago
0
Protein sequence wrongly identified as DNA
#1574
gavinmdouglas
closed
1 year ago
4
Getting gene wide dN and dS values
#1573
ElizabethRobbins
closed
1 year ago
4
Compile error #1564 persists in version 2.4.47 (Ubuntu 20.04.5)
#1572
mjeltsch
closed
1 year ago
4
Help with FUBAR Json
#1571
raufs
closed
1 year ago
2
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