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vgteam
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vg
tools for working with genome variation graphs
https://biostars.org/tag/vg/
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Hello, I want to get some information from Snarl file
#4270
pioneer-pi
closed
1 month ago
1
Haplotype sampling example
#4269
jltsiren
closed
2 months ago
0
Pad libdeflate for renaming on Mac
#4268
adamnovak
closed
1 month ago
0
vg mpmap mapping reads to pan-transcriptom too slow
#4267
jkfo002
closed
2 months ago
8
Release vg v1.57.0
#4266
adamnovak
closed
1 month ago
1
Add codenames
#4265
adamnovak
closed
2 months ago
0
ERROR: Tag "transcript_id" not found in attributes (line 145).
#4264
08li20
opened
2 months ago
3
Variant Calling from HPRC Pangenome
#4263
bipinbalan
opened
2 months ago
3
I have a question while using vg
#4262
pioneer-pi
closed
2 months ago
1
I have a question while using vg.
#4261
pioneer-pi
opened
2 months ago
6
vg call crash with "ERROR: Signal 6 occurred. VG has crashed."
#4260
vrenaul1
closed
2 months ago
8
Some questions about the <vg call> commond output
#4259
Kled111
opened
3 months ago
7
Issue with VCF generated after running vg haplotypes
#4258
eblerjana
opened
3 months ago
2
Can't change the libdeflate install_name on MacOS "because larger updated load commands do not fit"
#4257
adadiehl
closed
1 month ago
3
This error occurs because there is something wrong with the gff file.
#4256
08li20
closed
2 months ago
12
Fix block 0 subranges
#4255
adamnovak
closed
2 months ago
0
Contiguous subpaths cause error
#4254
glennhickey
closed
2 months ago
1
How should I regenotype VCFs using vg?
#4253
rickymagner
opened
3 months ago
2
Better traversal size caps in vg call
#4252
glennhickey
closed
3 months ago
0
what(): obsolete, invalid, or corrupt protobuf input
#4251
RohitKapila
closed
3 months ago
1
position X+Y is not inside node X
#4250
Kled111
opened
3 months ago
1
Negative end of path positions in vg giraffe mapping
#4249
iamdeaardappel
opened
3 months ago
1
Support indexed GAF
#4248
adamnovak
closed
2 months ago
0
vg giraffe output file
#4247
Kled111
closed
3 months ago
1
vg giraffe - Signal 6 occurred. VG has crashed
#4246
jdamas13
opened
3 months ago
1
VG has crashed
#4245
RohitKapila
closed
3 months ago
0
ERROR: Signal 6 occurred. VG has crashed. Terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc
#4244
RohitKapila
closed
3 months ago
1
remove repetitive words
#4243
rustrover
closed
1 month ago
1
Use P lines to improve GFA round-tripping
#4242
adamnovak
closed
3 months ago
0
Update options for distance indexing
#4241
xchang1
closed
3 months ago
0
VG convert to gfa and back will drop path data.
#4240
Robin-Rounthwaite
closed
3 months ago
7
vg construct will let you create a graph without reference paths, with different path names than Cactus
#4239
adamnovak
opened
3 months ago
0
ERROR: Signal 6 occurred. VG has crashed.
#4238
mariarecuerda6
closed
3 months ago
8
Can vg construct a trans-chromosomal graph ?
#4237
dudududu12138
opened
3 months ago
5
Annotate subpath
#4236
parsaeskandar
closed
1 month ago
1
vg surject: incorrect behavior near polymorphic {repetitive} insertions
#4235
tdlong
closed
3 months ago
4
Filter reads
#4234
xchang1
closed
3 months ago
0
I have a question about gam file.
#4233
pioneer-pi
closed
4 months ago
2
Release vg v1.56.0
#4232
jeizenga
closed
2 months ago
0
Use the right DOI for the real GBZ paper
#4231
adamnovak
closed
4 months ago
1
Oddly high mapping quality when aligning reads with Ns
#4230
alshai
opened
4 months ago
6
Mostly consistently left align in surject
#4229
jeizenga
closed
4 months ago
1
error vg autoindex: Input is not sufficient to create indexes
#4228
MarionPerrier
closed
4 months ago
2
vg giraffe mapping HiFi
#4227
brettChapman
closed
4 months ago
1
`vg autoindex` fails on GFA file containing 20k SARS-CoV-2 sequences.
#4226
TheHarshShow
closed
4 months ago
1
I cant get .vg file using vg construct
#4225
NahlaHu
opened
4 months ago
2
Fetch test reads over possibly-more-reliable HTTPS
#4224
adamnovak
closed
4 months ago
0
Fix spurious deletions introduced by dozeu's seeding heuristic
#4223
jeizenga
closed
4 months ago
0
No sample & read group field in BAM output with vg map
#4222
YannDussert
opened
4 months ago
5
Unified parallel GBWT construction
#4221
jltsiren
closed
4 months ago
0
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