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vgteam
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vg
tools for working with genome variation graphs
https://biostars.org/tag/vg/
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No sample & read group field in BAM output with vg map
#4222
YannDussert
opened
4 months ago
5
Unified parallel GBWT construction
#4221
jltsiren
closed
4 months ago
0
Add notion of eligible reads to GAM comparison
#4220
adamnovak
closed
4 months ago
1
Problem with vg autoindex with phased VCF
#4219
Mirkocoggi
closed
5 months ago
2
Missing '--alt-prefix' option in recent versions of vg deconstruct.
#4218
markcharder
opened
5 months ago
0
`vg giraffe` for long reads
#4217
Wenhai-Zhang
closed
5 months ago
1
Using vg to analyze transcriptomic data from a mixed background
#4216
Jokendo-collab
opened
5 months ago
4
Feature request: Accept jellyfish kmer counts for vg haplotypes
#4215
JosephLalli
opened
5 months ago
2
Merging alignment graphs vs merging BAMs
#4214
dbrami
opened
5 months ago
3
How to tanslate the Minigraph-cactus result to SequenceTubeMaps through vg
#4213
ld9866
closed
4 months ago
2
Release vg v1.55.0
#4212
xchang1
closed
4 months ago
0
Now I want to get some information from pack file.
#4211
pioneer-pi
opened
5 months ago
1
VG Augment fails to run (Signal 6)
#4210
greggedman
opened
5 months ago
0
vg sim error: [insert_gbwt_path()] path name already exists:
#4209
cwatt
closed
5 months ago
3
Reference vg-data at its new home
#4208
adamnovak
closed
5 months ago
0
giraffe performance
#4207
sdws1983
opened
5 months ago
6
I have a question about x.snarls file.
#4206
pioneer-pi
closed
2 months ago
16
Low F1 Scores for DEL and INS
#4205
YibinQiu
opened
5 months ago
2
Deletions at start of CIGAR sequences
#4204
huzuner
closed
4 months ago
8
Is there a way to chunk the gam file every 500kb length without entering the "path range" manually?
#4203
tanger-code
closed
5 months ago
0
I have a question about vg's GAM file.
#4202
pioneer-pi
closed
2 months ago
4
Multithreading (option "-t 20" ) does not work in vg giraffe.
#4201
Aasesss
closed
5 months ago
4
VG has crashed
#4200
dingkeyue
opened
6 months ago
0
Studying allele-biased expression with VG
#4199
AlineMuyle
closed
6 months ago
2
error [vg call]: No paths with selected reference sample
#4198
zhixue
closed
5 months ago
2
Erro in vg index step cannot get the gbwt result
#4197
ld9866
opened
6 months ago
1
VG chunk help
#4196
tanger-code
closed
5 months ago
0
I have a question about GAM to BAM.
#4195
pioneer-pi
closed
6 months ago
1
error [vg call]: No reference paths found
#4194
YibinQiu
closed
6 months ago
5
vg grep the none-reference sequence from the Minigrah-Cactus result?
#4193
ld9866
closed
6 months ago
3
fixed "munti-path" typo in readme
#4192
Robin-Rounthwaite
closed
4 months ago
0
vg: src/constructor.cpp:2230: void vg::Constructor::construct_graph(const std::vector<FastaReference*>&, const std::vector<vcflib::VariantCallFile*>&, const std::vector<FastaReference*>&, const std::function<void(vg::Graph&)>&): Assertion `reference_for.count(fasta_contig)' failed.
#4191
hndxjsr
opened
6 months ago
1
Recognize sample#contig paths in GFA to GBWTGraph
#4190
jltsiren
closed
6 months ago
0
questions on path cover haplotypes and haplotype sampling
#4189
HongboDoll
closed
6 months ago
2
add chains stats (-C)
#4188
glennhickey
closed
5 months ago
0
vg genotype
#4187
pengyan19
opened
6 months ago
1
Diploid sampling in Giraffe
#4186
jltsiren
closed
6 months ago
0
Discrepancy in SV Counts between vg deconstruct and Input SV Data
#4185
YibinQiu
opened
6 months ago
0
Remove exit handling for GBWT buffer size in autoindex
#4184
jeizenga
closed
6 months ago
0
stuck in the autoindex command around three days
#4183
linfanxiao
closed
6 months ago
5
Zipcode tree
#4182
xchang1
closed
5 months ago
0
Release vg v1.54.0
#4181
adamnovak
closed
5 months ago
0
Add more codenames
#4180
adamnovak
closed
6 months ago
0
vg has crashed
#4179
seunghohan990922
opened
7 months ago
0
Handle P-lines that specify haplotypes in vg autoindex
#4178
jeizenga
closed
7 months ago
0
vg giraffe can crash in the Banded Global Aligner
#4177
adamnovak
opened
7 months ago
16
add citations to README
#4176
glennhickey
closed
6 months ago
0
giraffe: Haplotype::prefix() error when running haplotype sampling / personalization feature
#4175
alshai
closed
7 months ago
2
Low "Total perfect" Read Count in vg stats -a Output
#4174
YiBenqiu
opened
7 months ago
4
can vg gamcompare handle alignments without a refpos
#4173
HongboDoll
closed
6 months ago
4
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