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wdecoster
/
NanoPlot
Plotting scripts for long read sequencing data
http://nanoplot.bioinf.be
MIT License
407
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would Nanoplot support plotting results for a single contig?
#379
zhengzhenxian
closed
1 week ago
2
Limit on plotting long sequences?
#378
desmodus1984
opened
3 weeks ago
2
multiple input file types
#377
cherlynty
opened
3 weeks ago
1
Mean read quality calculation
#376
alvanuffelen
opened
1 month ago
2
NanoPlot and NaoStat Errors: site-packages/Bio/File.py", line 72, in as_handle with open(handleish, mode, **kwargs) as fp: TypeError: expected str, bytes or os.PathLike object, not TextIOWrapper
#375
HW411
opened
1 month ago
1
#!NanoPlot -o nanoplot_output --fastq_rich barcode04.fastq.gz
#374
ghislain-ctl
closed
1 month ago
3
Report not generated: error tokenizing data
#373
pclavell
closed
1 month ago
4
different NanoStats.txt file
#372
ScarlettPegany
opened
1 month ago
4
Q10 to Q30 quality score thresholds not available in latest NanoPlot version
#371
sandratra-rab
closed
1 month ago
3
NanoPlot not making figures: Error "matplotlib.cm' has no attribute 'cmap_d'
#370
cavery12
closed
2 months ago
3
NanoPlot 1.42.0 has crashed
#369
mithunbge06
closed
2 months ago
2
Not printing readID when run on fastq files
#368
pclavell
closed
2 months ago
4
Request for detailed explanations of numeric values in NanoPlot report
#367
KushanManahara
closed
3 months ago
2
Adding Q30 and Q50 to summary statistics of NanoPlot report
#366
Fedeluppi
closed
1 month ago
4
setup.py problem
#365
lihaicheng7003
closed
3 months ago
3
Confusion regarding arrow formatted files
#364
TBradley27
closed
3 months ago
6
Running NanoPlot on aligned bam file demuxed by Dorado?
#363
tchrisboles
closed
3 months ago
2
Unexpected keyword argument
#362
axelphilip
closed
4 months ago
11
Wrong value for the mean read quality
#361
DenisFilloux
closed
2 months ago
1
Resulting Image(png) Generation Issues
#360
RADIOMUMM
opened
4 months ago
12
concatenate the different NanoStats.txt files
#359
SueFletcher
closed
2 months ago
1
minimum read length
#358
lucyintheskyzzz
closed
5 months ago
2
NanoPlot: error: one of the arguments --fastq --fasta --fastq_rich --fastq_minimal --summary --bam --ubam --cram --pickle --feather is required
#357
lucyintheskyzzz
closed
5 months ago
4
Using barcoded BAM files with no summary
#356
Ge0rges
closed
2 months ago
6
Quality Scores
#355
BerrocalRubio333
closed
2 months ago
3
Web Service not loading in CA
#354
jennifergribble-nanopore
closed
6 months ago
7
Nanoplot Errno32 Broken pipe
#353
teodorabu
closed
7 months ago
2
runs very slowly without "--only-report" option
#352
chucknordy
opened
7 months ago
7
Negative values in Weighted Histograms
#351
LiaOb21
closed
7 months ago
4
Weigted Histogram
#350
AsmaaSamyMohamedMahmoud
opened
8 months ago
4
issue/warning?
#349
gunjanpandey
closed
6 months ago
1
pandas.value_counts is deprecated
#348
jodjo86
closed
9 months ago
1
AttributeError: PolyCollection.set() got an unexpected keyword argument 'stat_func'
#347
mjfos2r
closed
6 months ago
2
--only-report option added
#346
juanjo255
closed
9 months ago
6
Return only the report
#345
juanjo255
closed
9 months ago
3
Error in running nanoplot .Doesnot produce combined result file.
#344
ap1438
closed
10 months ago
1
NanoPlot 1.41.6 has crashed
#343
SelfShubham
closed
10 months ago
1
Difference in read quality output from bam and summary file
#342
teodorabu
closed
10 months ago
2
Number of reads from NanoPlot doesn't match samtools
#341
KunFang93
closed
10 months ago
9
ValueError: Invalid character in quality string
#340
Sreelekshmi-291
closed
6 months ago
1
Nanoplot iterations produce different outputs
#339
ASTR44
closed
11 months ago
2
Thank you for your newest github release
#338
erinyoung
closed
11 months ago
1
Import Error
#337
tahir58
closed
11 months ago
4
Problem ran NanoPlot
#336
gosalone
closed
11 months ago
7
Not all dots seem to be plotted
#335
ryotag
closed
11 months ago
6
Nanoplot quality thresholds are poorly tuned for current datasets
#334
nhartwic
closed
7 months ago
3
module 'matplotlib.cm' has no attribute 'cmap_d'
#333
Ghahfarokhi
closed
11 months ago
4
Update license; missed in 80caf99a88d80dc61a30e975a1aa4375a93a7be0
#332
cbrueffer
closed
1 year ago
1
NanoPlot 1.41.0 has crashed :-(
#331
Ajuju0804
closed
1 year ago
4
mean quality is different between 1.40.2 and 1.41.0
#330
lovelynewGao
closed
1 year ago
1
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