Genome-Bioinformatics Practicals

Course material for the practicals organised

• for the MSc Bioinformatics at QMUL.
• for the 2012 SIB summer school in bioinformatics and population genomics (Adelboden)
• for the 2016 SIB spring school in bioinformatics and population genomics (Leukerbad)

Practicals include:

• Genome assembly and annotation
• Read mapping and variant calling
• Simple gene expression analysis

Previous years courses are backed up in the previous-courses directory, while the current course is saved in the directory current-year. Remember to backup it as 202x in the previous-courses when starting a new year.

Website generation

Website is generated from Mardowns using Jekyll. Be sure that the file _config.yml is updated to point to the current year course materials.
The links in the Markdowns must point to the html, not the md files.

Deploying

I compile, then cp out to gh-pages