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In ["Genomics Reveals Complex Population History and Unexpected Diversity of Eurasian Otters (Lutra lutra) in Britain Relative to Genetic Methods", du Plessis et al., 2023, `10.1093/molbev/msad207`](h…
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We want multiple test datasets to implement and test the population genomics features. Otter will be one of them, as we can refer to a publication that studies the population structure. We need at lea…
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TileDB-VCF has some similar features to Zarr for storing VCF: https://docs.tiledb.com/main/integrations-and-extensions/genomics/population-genomics
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Hello,
I have tried implementing this software for a population genomics dataset of mine. I am having issues with graphing and I can't seem to find a way to adjust the graph scope to show more of t…
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R for social scientists: https://clanfear.github.io/CSSS508/
Data vis https://datavizs23.classes.andrewheiss.com/
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> Next-generation sequencing (NGS) technologies have enabled affordable sequencing of billions of short DNA fragments at high throughput, paving the way for population-scale genomics. Genomics data an…
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Hi Martin,
My popgenWindows.py doesn't work, the code i typed in is :
python ./genomics_general-master/popgenWindows.py -w 50000 -m 5000 -g combined.geno.gz -o output.csv.gz -f phased -T 20 -p MA…
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
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Hi,
im using rfmix v2 for cattle population genomics, and really enjoy it!
I have SNPs from whole genome sequence from several populations and im playing around with the tool to infer introgress…
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Hello,
I am using MSMC2 to infer split times between several populations, and when it comes to converting the time boundaries output by MSMC2 into years I see that there are two formulas available:…