xiaochuanle NECAT issues

xiaochuanle / NECAT

Nanopore data assembler

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NECAT installation

#60 Narmatha99 closed 5 months ago
0
Restart with config file modified

#59 wlamTsang closed 7 months ago
0
Polishing step is not working

#58 ilenia6 opened 1 year ago
0
cns_1_al_vol_0.sh: line 16: 35702 Bus error

#57 QichengMa opened 1 year ago
6
NECAT with new nanopore R10 Q20+

#56 joscarhuguet opened 1 year ago
0
NUM_ITER

#55 theo-allnutt-bioinformatics opened 1 year ago
1
Very large temporary files

#54 theo-allnutt-bioinformatics opened 1 year ago
0
Issue about the assembled genome size about bridged and polished step

#53 linshengnan09 opened 1 year ago
1
fsa_rd_tools: fsa/utility.cpp:47: size_t fsa::FindLongestXHeap(std::vector<int>&, long long int): Assertion `index > 0' failed.

#52 xylapple2013 opened 1 year ago
0
Detailed Documentation and Explanation of Output

#51 ndeimler99 opened 1 year ago
0
I am not able to use necat

#50 Suelina opened 1 year ago
0
difference between birdge_contigs.fasta size and screen output assembly size

#49 pwkooij closed 1 year ago
0
NECAT running error

#48 uqunakan opened 1 year ago
0
Issue assembling plant genome with NECAT

#47 LeoVincenzi opened 1 year ago
4
Died at /home/NECAT/Linux-amd64/bin/Plgd/Script.pm line 25.

#46 jasonshiller opened 2 years ago
0
Question

#45 yzhang-github-pub opened 2 years ago
0
Quiet mode / verbosity levels

#44 KasperThystrup opened 2 years ago
0
Failed to run script, 137 in the assembly step

#43 anacatalan opened 2 years ago
1
[Warning] Failed to run script, 139

#42 ChooseelBunsuwansakul opened 2 years ago
1
Perl strict fix

#41 hyphaltip opened 2 years ago
0
File not exist error.

#40 gyudae opened 2 years ago
1
assembly error

#39 AstrMary opened 2 years ago
1
Correction failed for one partition

#38 j-bartos opened 3 years ago
0
DATA squeezed alot

#37 khush876 opened 3 years ago
0
Bridged and polished reads difference

#36 sellers0 opened 3 years ago
1
Could necat increase the amount of reads corrected?

#35 zmz1988 closed 2 years ago
0
File not Exist error

#34 Mondlii closed 3 years ago
3
[FATAL] No overlaps were loaded

#33 544728460 opened 3 years ago
1
where is necatsv?

#32 christinawu2008 opened 3 years ago
0
Mapping corrected reads to raw reads

#31 jwcodee opened 3 years ago
0
Update read_store.cpp

#30 starskyzheng opened 3 years ago
0
Update read_store.cpp

#29 starskyzheng opened 3 years ago
0
Plasmid loss

#28 liweicheng0011 opened 3 years ago
0
[Error] Reached to maximum number of script errors

#27 jpummil opened 4 years ago
7
error occurred when installing the software

#26 zhaotao1987 opened 4 years ago
4
Apply patch required to build necat in bioconda

#25 natir opened 4 years ago
0
fq.gz instead fastq.gz for input files doesnt work

#24 estolle opened 4 years ago
2
What is the license of NECAT

#23 natir opened 4 years ago
0
contig nomenclature

#22 dcopetti opened 4 years ago
0
empty bubble file

#21 dcopetti opened 4 years ago
0
retrieving initial read names

#20 chklopp opened 4 years ago
0
NECAT with two sets of reads

#19 chklopp opened 4 years ago
0
Can NECAT restart an aborted run?

#18 cabbagesofdoom opened 4 years ago
1
how to set the config file

#17 shehongbing opened 4 years ago
1
segfault

#16 colindaven closed 3 years ago
6
Unrecognized the suffix

#15 xuzhougeng opened 4 years ago
3
Is gfa output available

#14 ghost opened 4 years ago
1
Get the very small contains

#13 shehongbing opened 5 years ago
1
Smartmatch is experimental at /pwd/NECAT/Linux-amd64/bin/Plgd/Project.pm line 232.

#12 Yunxia-li opened 5 years ago
9
Details of parameters in config.txt

#11 CrazyHsu opened 5 years ago
5