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yyoshiaki
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VIRTUS
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
https://github.com/yyoshiaki/VIRTUS/wiki
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singularity mode
#40
antoine4ucsd
opened
1 month ago
0
Parallel processing
#39
gailrosen
opened
4 months ago
1
Difficulty with using wrapper for viral gene counts
#38
SomeGuy3865
closed
11 months ago
1
How to run wrapper with specific single virus
#37
SomeGuy3865
closed
11 months ago
1
Question about Input
#36
SomeGuy3865
closed
1 year ago
1
TypeError: Passing a set as an indexer is not supported. Use a list instead.
#35
patrick-douglas
closed
1 year ago
1
Cluster methods used by VIRTUS and heatmap issue
#34
patrick-douglas
opened
1 year ago
1
EXITING because of FATAL ERROR: could not create output file: ...virtus143/Log.out Check if the path ... exists and you have permissions to write there
#33
ozy913
opened
1 year ago
1
create index failed
#32
km-2021
opened
2 years ago
10
salmon quant issues
#31
sunnyyakima
opened
2 years ago
1
Tool definition failed validation error when running createindex_singlevirus.cwl
#30
jlee110
opened
2 years ago
7
How to change location of output temporary directory from root to home partition?
#29
jlee110
closed
2 years ago
0
Update singularity.test.sh
#28
yyoshiaki
closed
2 years ago
0
ERROR Tool definition failed validation
#27
nmc-ei
closed
3 years ago
15
Does the --no-container work?
#26
qiyubio
closed
3 years ago
1
docker tag should be latest
#25
qiyubio
closed
3 years ago
1
minor bug fix
#24
yyoshiaki
closed
3 years ago
0
pandas error when parsing a virus-less file
#23
yyoshiaki
opened
3 years ago
0
vt1.2.1
#22
yyoshiaki
closed
3 years ago
0
index building
#21
tickteng
closed
3 years ago
4
Installation Issue
#20
fjmuzengyiheng
closed
3 years ago
1
Developmentv1.2
#19
yyoshiaki
closed
3 years ago
0
STAR --genomeSAindexNbases setting
#18
zhangzlab
closed
3 years ago
3
wrapper dtype specification
#17
Aiuthss
closed
3 years ago
0
komplexity filter for results
#16
Aiuthss
closed
3 years ago
0
source change in createindex.job.yaml
#15
Aiuthss
closed
3 years ago
0
komplexity filter for results
#14
Aiuthss
closed
3 years ago
0
virus source change in createindex.job.yaml
#13
Aiuthss
closed
3 years ago
0
createindex.job.yaml url_virus should be corrected
#12
zhangzlab
closed
3 years ago
2
Developmentv1.1
#11
yyoshiaki
closed
3 years ago
0
fix STAR multimap removal
#10
yyoshiaki
closed
3 years ago
0
Develop
#9
Aiuthss
closed
3 years ago
0
Revert "fasterq-dump fix"
#8
yyoshiaki
closed
3 years ago
0
fasterq-dump fix
#7
Aiuthss
closed
3 years ago
0
Update tmp cleaning
#6
Aiuthss
closed
3 years ago
0
Revert "switch to https://schema.org/version/latest/schema.rdf"
#5
yyoshiaki
closed
3 years ago
0
wrapper
#4
Aiuthss
closed
3 years ago
2
switch to https://schema.org/version/latest/schema.rdf
#3
mr-c
closed
3 years ago
1
test error
#2
mabouelk
closed
3 years ago
8
Add CircleCI config.yml
#1
kozo2
closed
4 years ago
0