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zavolanlab
/
zarp-cli
A user-friendly command-line interface for the ZARP RNA-seq analysis workflow
https://zavolanlab.github.io/zarp-cli/
Apache License 2.0
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docs: add latest poster
#93
ninsch3000
closed
3 weeks ago
1
docs: update README.md
#92
uniqueg
closed
3 weeks ago
1
chore: add CITATION.cff
#91
uniqueg
closed
3 weeks ago
1
docs: various updates (rebase)
#90
uniqueg
closed
3 weeks ago
1
build: v1.0.0-rc.1
#89
uniqueg
closed
6 months ago
1
docs: minor fixes
#88
uniqueg
closed
6 months ago
1
feat: Conda support for HTSinfer workflow
#87
uniqueg
closed
7 months ago
1
fix(htsinfer): set Singularity bind args for Conda
#86
uniqueg
closed
7 months ago
0
feat: minimize Singularity bind paths
#85
uniqueg
opened
7 months ago
0
feat: set verbosity during init
#84
uniqueg
closed
7 months ago
1
fix: various prerelease fixes
#83
uniqueg
closed
7 months ago
1
fix: various pre-release fixes
#82
uniqueg
closed
7 months ago
1
fix: propagate HTSinfer inferences
#81
uniqueg
closed
7 months ago
1
fix: propagate HTSinfer inferences
#80
uniqueg
closed
7 months ago
1
fix: mount TMP directories for Singularity
#79
ninsch3000
closed
7 months ago
1
fix: mount TMP directories for Singularity
#78
ninsch3000
closed
7 months ago
1
feat: pass Snakemake profile to ZARP workflow
#77
uniqueg
closed
1 year ago
1
feat: restructure HTSinfer output dir tree
#76
uniqueg
closed
1 year ago
1
build: fix installation
#75
uniqueg
closed
1 year ago
1
build: fix environment files to avoid warnings & errors
#74
uniqueg
closed
1 year ago
0
feat: include verbosity level in default configuration
#73
uniqueg
opened
1 year ago
0
feat: restructure HTSinfer output directory tree
#72
uniqueg
closed
1 year ago
0
docs: provide extensive documentation
#71
uniqueg
closed
1 year ago
1
feat: support sample-specific genome assembly & version params
#70
uniqueg
opened
1 year ago
0
feat: support default versions for multiple Ensembl databases
#69
uniqueg
opened
1 year ago
0
feat: pass HTSinfer options
#68
uniqueg
opened
1 year ago
0
build: use Conda for dev environment setup
#67
uniqueg
closed
1 year ago
1
build: use Conda for dev environment setup
#66
uniqueg
closed
1 year ago
0
fix: bind input file locations to Singularity
#65
uniqueg
closed
1 year ago
1
fix: input files for SMK workflows are not always found when executing via Singularity
#64
uniqueg
closed
1 year ago
0
feat: execute ZARP
#63
uniqueg
closed
1 year ago
1
ci: add Singularity to integration tests
#62
balajtimate
closed
1 year ago
1
feat: fetch genome resources and set paths
#61
uniqueg
closed
1 year ago
1
feat: infer missing metadata
#60
balajtimate
closed
1 year ago
2
feat: use profiles in Snakemake call
#59
balajtimate
closed
1 year ago
0
fix: use defaults from user config
#58
uniqueg
closed
1 year ago
1
feat: set dummy data
#57
uniqueg
closed
1 year ago
1
feat: set dummy data
#56
uniqueg
closed
1 year ago
0
fix: use defaults from user config
#55
balajtimate
closed
1 year ago
1
feat: set sample config defaults
#54
uniqueg
closed
1 year ago
2
feat: set sample config defaults
#53
uniqueg
closed
1 year ago
0
feat: implement sample processing flow
#52
uniqueg
closed
1 year ago
1
refactor: major code cleanup
#51
uniqueg
closed
1 year ago
1
feat: support for fetching libraries from SRA
#50
uniqueg
closed
1 year ago
1
docs: build API reference for all modules
#49
uniqueg
closed
1 year ago
1
docs: API reference not built for all modules
#48
uniqueg
closed
1 year ago
0
docs: fix page title
#47
uniqueg
closed
1 year ago
1
docs: fix docs title
#46
uniqueg
closed
1 year ago
0
docs: fix broken/outdated badges
#45
uniqueg
closed
1 year ago
1
docs: fix broken/outdated badges
#44
uniqueg
closed
1 year ago
0
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