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zkutalik
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ssimp_software
GNU General Public License v3.0
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candidate for Version 0.5 with some doc changes
#71
aaronmcdaid
closed
6 years ago
1
Delete SNPs where the two allele names are identical.
#70
aaronmcdaid
closed
6 years ago
4
Check.filesize.and.fix.chr22
#69
aaronmcdaid
closed
6 years ago
0
Add a short 'Troubleshooting' section, relevant for the recent bug reports
#68
aaronmcdaid
closed
6 years ago
2
documentation: change 'fcqrO9HWcINS2Qq' to 'uOyjAtdvYjxxwZd' in the urls
#67
aaronmcdaid
closed
6 years ago
0
Inconsistent location for the build database
#66
aaronmcdaid
closed
6 years ago
2
Create more meaningful error messages
#65
sinarueeger
closed
6 years ago
1
Assertion `map_of_ref_records_of_tags.size() == tag_its_.size()' failed
#64
mcarolborges
closed
6 years ago
12
Fix.a.bug
#63
aaronmcdaid
closed
6 years ago
0
Fixing bug related to liftover-database
#62
sinarueeger
closed
6 years ago
1
which_build_t:: unknown' failed.
#61
jimmyzliu
opened
6 years ago
30
New p-values for input genotypes
#60
CecilieSiggaard
opened
6 years ago
5
Z and r2 reimputed statistics not been calculated
#59
sjfandrews
opened
6 years ago
13
Assertion failed: (crps.pos > 0), function main, file src/ssimp.cc, line 812.
#58
sjfandrews
closed
6 years ago
3
Implement lambda option "optimal"
#57
sinarueeger
closed
6 years ago
0
Implement Variance Matching
#56
sinarueeger
closed
6 years ago
0
Document repository > DEV_INFO
#55
sinarueeger
closed
6 years ago
0
test script ssimp_chunks.sh
#54
sinarueeger
opened
6 years ago
0
'lexical_cast_int_X_is_23', so that you can specify 'X'/'x'/'chrx'/'c…
#53
sinarueeger
closed
6 years ago
0
chr x vs 23
#52
sinarueeger
closed
6 years ago
0
Option --impute.snp currently only takes rsids > make sure it accepts chr:pos as well (X and 23 too)
#51
sinarueeger
closed
6 years ago
1
Chr x23
#50
aaronmcdaid
closed
6 years ago
0
Chr x23
#49
sinarueeger
closed
6 years ago
0
Chr x23
#48
sinarueeger
closed
6 years ago
0
Upscale males on the X chromosome so that they are 0-or-2, not 0-or-1
#47
sinarueeger
closed
6 years ago
0
Chr x23
#46
sinarueeger
closed
6 years ago
0
Added 'gwas/GIANT_HEIGHT_Wood_oneWindowOnChr22.tsv.gz' in again. It's…
#45
sinarueeger
closed
6 years ago
1
(not urgent, but easy!) A gwas file was missing - I've added it back again
#44
aaronmcdaid
closed
6 years ago
1
Update.docu
#43
sinarueeger
closed
6 years ago
0
Create Wiki / FAQ
#42
sinarueeger
opened
6 years ago
1
How to interpret Z_reimputed and r2_reimputed // GC lambda
#41
drveera
closed
6 years ago
12
Fix static linking on 'hpc1', with the path to the 'gsl' and 'glscbla…
#40
sinarueeger
closed
6 years ago
0
static compilation now working
#39
aaronmcdaid
closed
6 years ago
0
Remove.hardcoded.lambdas
#38
sinarueeger
closed
6 years ago
0
error with simple example // build database
#37
sinarueeger
closed
6 years ago
3
sex ratio difference between GWAS and reference panel
#36
sinarueeger
closed
6 years ago
0
create a 'static-bin' folder, with the static binary compiled on AM's…
#35
sinarueeger
closed
6 years ago
0
(late) Update the tests to include the extra columns
#34
sinarueeger
closed
6 years ago
0
compile static version
#33
sinarueeger
closed
6 years ago
5
Add three new columns, P.imp, N.imp. bst.imp. Note that sometimes the…
#32
sinarueeger
closed
6 years ago
0
Download build db
#31
sinarueeger
closed
6 years ago
0
remove all the lambdas that are not controlled by the default
#30
aaronmcdaid
closed
6 years ago
3
download the build database automatically into the right place
#29
aaronmcdaid
closed
6 years ago
2
R function to calculate P value
#28
drveera
closed
6 years ago
6
copyright thing in docu/usage.txt
#27
sinarueeger
closed
6 years ago
0
Chunks
#26
sinarueeger
closed
6 years ago
0
create new version: ssimp-0.2 efficient imputation of single SNPs and script for multiprocessing (2017-01-10)
#25
sinarueeger
closed
6 years ago
0
check documentation in docu/
#24
sinarueeger
closed
6 years ago
0
adding an option --header
#23
sinarueeger
closed
6 years ago
0
chr 23 / X??
#22
sinarueeger
closed
6 years ago
19
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