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524D
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compareMS2
Compare samples by MS2 spectra
MIT License
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Output intersect and complements in MGF
#55
magnuspalmblad
opened
6 months ago
0
For self-comparison, skip redundant file checks and memory allocation
#54
magnuspalmblad
opened
6 months ago
0
Possible intensity scaling issue for two-dataset comparison
#53
magnuspalmblad
opened
7 months ago
1
All mass differences at -1, 0, 1
#52
magnuspalmblad
closed
7 months ago
1
SDRF support for CLI and GUI
#51
magnuspalmblad
opened
12 months ago
1
Add 1-to-N and N-to-1 run modes
#50
magnuspalmblad
opened
1 year ago
0
exporting mzQC runQuality for compareMS2 comparison with reference dataset?
#49
magnuspalmblad
opened
1 year ago
0
Unexpected behavior when restricting RT window (msconvert bug?)
#48
magnuspalmblad
closed
1 year ago
2
How we can increase the speed of compareMS2
#47
chinmayaNK22
opened
1 year ago
2
Update 3.1 Configuring compareMS2 in README.md
#46
magnuspalmblad
opened
1 year ago
0
Replace Figure 1 in README.md with screenshot
#45
magnuspalmblad
opened
1 year ago
0
Debugger doesn't appear on Linux
#44
524D
opened
1 year ago
0
Add spectral angle (SA) metric for individual spectra comparisons
#43
magnuspalmblad
closed
2 years ago
1
Add (as experimental feature) summary of m/z and intensities of spectral comparisons in a specified dot product and delta-m/z range
#42
magnuspalmblad
opened
2 years ago
0
Quality color scale does not update after run is finished
#41
magnuspalmblad
closed
2 years ago
1
Red-blue-green color scale should be red-green-blue to be consistent
#40
magnuspalmblad
closed
1 year ago
0
Rightmost digits in QC legend axis not shown
#39
magnuspalmblad
closed
2 years ago
1
Consistent capitalization
#38
magnuspalmblad
closed
2 years ago
0
Error reading sample_to_species_mapping.txt
#37
magnuspalmblad
closed
2 years ago
1
Add license
#36
magnuspalmblad
closed
2 years ago
1
Make new release for beta testers
#35
magnuspalmblad
closed
2 years ago
1
Add RT filters
#34
magnuspalmblad
closed
2 years ago
1
Details disappear when finished - keep and/or save to log file.
#33
magnuspalmblad
closed
1 year ago
0
Start scan and End scan not used in hash?
#32
magnuspalmblad
closed
2 years ago
2
Latest compareMS.exe does not run in GUI
#31
magnuspalmblad
closed
2 years ago
2
Missing comparisons, branches and wrong tree when repeating analyses!
#30
magnuspalmblad
closed
2 years ago
3
Add Newick to the output formats
#29
magnuspalmblad
closed
2 years ago
0
Reset branch/node/root selections in phylogenetic tree?
#28
magnuspalmblad
opened
2 years ago
0
Supporting additional image formats?
#27
magnuspalmblad
closed
2 years ago
1
Indicate image file format in "Save picture"
#26
magnuspalmblad
closed
1 year ago
1
Advanced parameters that could be consider basic parameters
#25
magnuspalmblad
closed
1 year ago
3
Make checkbox for "compare all spectra"
#24
magnuspalmblad
closed
2 years ago
0
MGF files not shown when browsing for files/directories
#23
magnuspalmblad
closed
2 years ago
1
Automatic MEGA run
#22
magnuspalmblad
opened
2 years ago
1
Adding flag -x to enable experimental features of compareMS2
#21
magnuspalmblad
closed
2 years ago
0
Code cleanup, compareMS2
#20
magnuspalmblad
closed
2 years ago
1
Making remaining constants (advanced) user inputs
#19
magnuspalmblad
closed
2 years ago
0
Major changes to metrics, inputs and intermediary formats
#18
magnuspalmblad
closed
2 years ago
1
If at all possible, calculate (symmetric) global metric in a single pass
#17
magnuspalmblad
closed
2 years ago
1
Add spectrum selection filter to compareMS2
#16
magnuspalmblad
closed
2 years ago
3
Add picture of (new) GUI to instructions
#15
magnuspalmblad
opened
2 years ago
0
Show quality by label color
#14
524D
closed
2 years ago
2
Installation instructions (Linux)
#13
magnuspalmblad
closed
1 year ago
1
Tree limited to initial area
#12
magnuspalmblad
closed
1 year ago
3
Non-transparent background of Load and Save Options icons in File menu.
#11
magnuspalmblad
opened
3 years ago
0
Create OSF companion project for storing and sharing example data.
#10
magnuspalmblad
closed
3 years ago
2
Behavior when not specfying the samples-to-species file
#9
magnuspalmblad
closed
3 years ago
1
GUI too large for small screens
#8
magnuspalmblad
closed
3 years ago
1
Adding zoom controls for tree
#7
magnuspalmblad
opened
3 years ago
3
Unexpected behavior (partial trees/labels appear incorrect)
#6
magnuspalmblad
closed
3 years ago
4
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