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Hi,
Thanks for the package. I am currently trying to run the multiamplicon but I am stuck at the dataMulti command with my dataset. It says (sorry for the french terminal) :
```
Erreur dans if (nr…
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Hi,
Thank you for developing AmpliconClassifier—it has been an invaluable resource for my research. I have a question regarding the interpretation of results in a specific case.
After running Am…
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Is there a need to classify the output of CoRAL or are all circular paths/amplicons output estimated to be ecDNA specifically?
Thanks again for the tool
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If the primer pair is oriented with the left primer on the positive strand and right primer negative, the amplicon span should have `Strand.POSITIVE`.
```
GGTCCAGTTCAAGTGCTGGGAGAGCATCCTCCACAAGGTCT…
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Hi,
Thanks for a great tool. I am playing around with genotyping amplicon data from Nanopore sequencing. I can get Straglr to call certain STRs but not others, and I wonder if I need to do somethin…
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Right now, no error is returned if a value too high for `overlap` is passed to `assembly_fragments`. For instance, you can pass a number longer than the template sequence itself, and it will simply re…
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The current amplicon coverage script devised by @dr-david won't work for all sets of primers and corresponding amplicons. The current logic exploits non-overlapping amplicon regions/positions to ident…
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Hi!
(this is in relation to previous email I sent you, I found a workaround)
There seems to be an edge case on some systems where --in_silico_pcr does not run unless you specify the number of th…
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This is the new Illumina competitor from Element Biosciences @Elembio
People are using it amplicons: [qiime2 forums xref](https://forum.qiime2.org/t/dada2-low-non-chimeric-input-after-denoising/317…
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current fix has a more stringent filtering of non overlapping reads in dada2. Some of those reads can be stitched back and I think we can do a better job at merging those, but will require some thinki…