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Error in susie_suff_stat(XtX = XtX, Xty = Xty, n = n, yty = (n - 1) * :
The estimated prior variance is unreasonably large.
This is usually caused by mismatch between the summary statistic…
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Hi,@smorabit, thank you for your answer to a small bug in my hdWGCNA last time. I have encountered a question that I would like to ask you. For example, the single-cell data I studied for stroke cons…
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Hi ShinyCell team,
Thank you so much for this amazing software! It has been extremely useful.
I recently noticed that when I plot the expression of a particular gene (Slc12a2) across three diffe…
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Hello
I am very interested in evaluating your package on human brain scRNAseq samples.
I tried it with all default (seurat object as input) but it only identifies macrophage and endothelial cells …
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Line chart variable that selects cell type won't change dynamically if you switch genes. It will always use the most recent one, or if you select the cell type you want first, and then submit, it will…
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Although I've specified NA values to be coloured grey in the heatmap (`na_col = "#e5e5e5"` in `pheatmap`), there are some genes that still display all-white rows when certain cell types are selected:
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Hi,
I'm currently trying to run ASTRA on my own data. My plan is to use the existing pretrained models on my own data. Therefore I looked into the script `Inference_Pipeline10_iter.ipynb` and tried…
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From Ronna:
"For each one of the single cell datasets that we have in the workbench - we need a saved analysis that is as close as possible to the published data, that includes the cell type assignme…
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The "Selected Cell Type" facet (cell_suspension.selected_cell_types.ontology_label/text) in the Data Browser "Tissue Type" dropdown contains pluralization of many values, resulting in duplications:
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Thank you for this awesome tool! Is there a way to download a subset of the gene expression raw data? For example, looking at a specific cell type of interest such as Astrocytes. I saw that you have t…