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I don't think --miniprot should be a binary parameter or described as output:
https://github.com/galaxyproject/tools-iuc/blob/b21f516390fcbbe3c098266ff0d72e64924aab00/tools/busco/busco.xml#L114
Fr…
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Hi!
I was wondering if it's possible to specify more than one lineage and download path for BUSCO in the .yaml file.
Thanks for the help!
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Add BUSCO completeness to any assembled genomes.
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Dear Dr. Lind,
I'm generating a custom eukdetect db and I'm stucked at get_uncomputed_taxid_per_busco.py. It fails with the following message:
"""
python /home/qi47rin/proj/00-git/EukD…
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Hello !
I have a question more than an issue, but maybe you can help me,
I am annotating a dozen of arthropods assemblies from a same genus with braker3 (arthropoda prot + RNAseq data),
For a…
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BUSCO for original assembly
BUSCO for non stranded assembly (n=12 gametogenesis January ACR samples included)
BUSCO for stranded assembly (n=5 deep dive ACR samples included)
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Dear author, I got the assembly after running the software, but the estimated genome integrity is very low, C:54.2%[S:42.5%,D:11.7%],F:2.0%,M:43.8%,n:1013,E:4.0%, I am not sure what went wrong. I atta…
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Hi
Kindly advise, we are using conda version of quast 5.0.2
```
quast -t 28 -f -b -o quast_test -1 ../../R6_read1_trimmomatic_1PE.fastq.gz -2 ../../R6_read2_trimmomatic_2PE.fastq.gz R6_RcB5_…
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Hi,
I am using hifiasm with parameter
hifiasm -o ./Hifiasm3_l3/Gon --primary -t20 --purge-max -l3 -s 0.35 --h1 ./HIC/Raw_Data/filtered_Insect_S118_L004_R1_001.fastq.gz --h2 ./HIC/Raw_Data/filtered…