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Hi, I'm attempting get CAZy annotation using:
**metacerberus.py --prodigal "$file_path" --hmm CAZy --dir_out "$output_dir"**
in which the file_path points towards an fna file of contigs.
The …
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Hi,
I have successfully added an external database (CAZy) to the squeezemeta pipeline (using SqueezeMeta v1.6.3). However, I have noticed that the annotations are missing from the files 12.{sample}.C…
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`cazy_webscraper` is not identifying the NCBI protein version accessions correctly, and is unable to pair up the downloaded data with data in the local CAZyme database.
```bash
Traceback (most rec…
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Extremely large CAZy database releases is increasing the memory intensity of `cazy_webscraper`, making it difficult to run the tool on standard office equipment (see [issue at `cazomevovle`](https://g…
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Usual suspects would be CAZy, Carbonet, Beilstein, SFG, UCSD, GLIC, International Glycoconjugate Organisation.
We need to see which of them are still missing and assign people to move this forward.
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Hello!
I got MetaCerberus to work, I'm using the third (annotation) part of the pipeline, inputting combined prokaryotic, eukaryotic and viral gene predictions predicted with different programmes. …
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using CAZy database (http://www.cazy.org/)
RNAer updated
8 years ago
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I am trying to retrieve metadata for Pfam and KEGG annotation terms but it seems the eggNOG mapper is not using the latest version of those databases and there is therefore a number of discrepancies (…
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Dear Developers,
I am trying to do CAZymes analysis using my mRNA reads. I downloaded a copy of the database (CAZyDB.08062022.fa), indexed it to Diamond format, and then performed a diamond blast. …
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The code below in METABOLIC-C.pl may causing an error in the final calculation of the number of genomes involved in metabolism.
my @tmp_enzymes_2 = split (/\;/,$CAZy_map{$GH_id}) will return a array,…