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Hi! Excited to try out this tool.
I currently have cell barcodes with corresponding cell-type annotations but the cells/barcodes that were filtered out when I processed my data in Seurat are still …
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Hello
I would like to ask if BLAZE can work with other type of single cell data such as split-seq technology.
These barcodes are a bit different than the 10X ones, since this technology uses 3 diff…
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**Describe the bug**
Hi there,
I‘m using ArchR to analysis my ATAC data. And I want to do barcode filtering in `createArrowFiles` step. I found that `getValidBarcodes` could help me extract the val…
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Hi Milo lab,
Thanks very much for providing such a user-friendly tool for annotating spatial transcriptomics.
I've been attempting to isolate/subset specific cell types within a region of inte…
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Hello -
In some workflows that could use umi-tools, we already have an explicit whitelist of the corrected cell barcodes. There is still a need to identify the non-error-corrected cell barcodes.
…
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### Ask away!
To whom it may concern,
I am a user of wf-single-cell and I have some questions regarding the internal workings of the pipeline, specifically concerning the barcode and UMI correctio…
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Hi again @drneavin :)
I got the error I was having on AssignCellsToSamples fixed yesterday. However, I'm now having a different error when running the DetectDoublets step of Dropulation. It seems …
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# Issue Report
## Please describe the issue:
Hello, I am currently performing target-specific custom barcode demultiplexing using Direct RNA seq data.
In the options, there is a setting for m…
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Hi, thanks so much for developing this great tool. I just run a 10x Genomics scRNA sequencing on a pool of hashtag multiplexed sample. I tried to use the cmd below to generate the cell-hashtag count m…
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### Description of feature
An option to enter the pipeline at the post-merge step with a finalized Seurat object `.rds`. This would allow for subset analysis for a specific cell type for example.
…