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DavidsonGroup
/
flexiplex
The Flexible Demultiplexer
https://davidsongroup.github.io/flexiplex/
MIT License
22
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Degenerate bases
#45
cnk113
opened
1 week ago
1
barcode and umi opposite sides and whitelist optimizations
#44
ljwharbers
opened
1 week ago
6
Panic due to out of range error when finding the substring
#43
olliecheng
opened
3 months ago
7
out_of_range error in substr
#42
ChangqingW
opened
3 months ago
1
reads with two barcode and one umi
#41
ashokpatowary
closed
3 months ago
12
Processing time
#40
nrhorner
closed
3 months ago
3
Fix Github Action build on HPC (libc 2.17)
#39
olliecheng
closed
3 months ago
0
Action to automatically build on x64 Linux and arm64/x64 macOS
#38
olliecheng
closed
3 months ago
0
Flexiplex barcode count clarification?
#37
cnk113
closed
3 months ago
1
Add a flag to report chimeric reads
#36
olliecheng
opened
3 months ago
0
Try trim remainder of the polyT
#35
ChangqingW
opened
3 months ago
0
Dual barcodes
#34
gwaldbieser
opened
3 months ago
1
Fix flexiplex_filter bug caused by small barcode lists
#33
olliecheng
closed
3 months ago
0
Enable barcode and UMI length to be given, instead of a sequence of ?'s
#32
olliecheng
opened
7 months ago
0
adding verbose flag
#31
ghar1821
closed
3 months ago
7
Fix issue where left search index is out of bounds
#30
olliecheng
closed
7 months ago
0
std::out_of_range when mapping reads
#29
ghar1821
closed
7 months ago
4
rename file to reads_ifs
#27
ChangqingW
closed
8 months ago
5
Segfault when running with process substitution on MacOS
#26
ChangqingW
closed
8 months ago
3
Add conda test for demultipex outputs; trim polyT
#25
ChangqingW
closed
3 months ago
5
Upper limit for flexiplex_filter
#24
nadiadavidson
opened
9 months ago
2
More customisable barcode patterns
#23
ChangqingW
closed
8 months ago
5
Build & packaging changes
#22
olliecheng
closed
9 months ago
0
Limiting search space or reporting distance from 5' / 3' ends
#21
yxsee
closed
10 months ago
1
UMI before barcode
#20
yxsee
closed
8 months ago
2
Sequences used for 5' ONT
#19
mcortes-lopez
closed
8 months ago
3
Add rank data after whitelist filtration
#18
olliecheng
closed
10 months ago
0
Add filter-barcodes.py to documentation
#17
olliecheng
closed
10 months ago
0
Add a filter-barcodes.py utility script for inflection point discovery
#16
olliecheng
closed
10 months ago
0
Exclude ambiguous barcodes etc.
#15
ChangqingW
closed
11 months ago
7
Exclude ambiguous barcodes; use aligment for locating barcode instead of searching for primer again
#14
ChangqingW
closed
1 year ago
1
Change endls to \n
#13
edoyango
closed
11 months ago
1
Automatically estimate number of cells for discovery mode.
#12
nadiadavidson
closed
10 months ago
1
Add option of reporting all read (not just hits), but appending barcodes to reads ID.
#11
nadiadavidson
opened
1 year ago
0
Stop flexiplex reversing output sequence when -i false and target in reverse compliment
#10
nadiadavidson
closed
10 months ago
1
Adding option to report UMI barcode in _reads_barcodes.txt output file?
#9
shuyi-w
closed
7 months ago
1
Possibility of UMI deduplication from flexiplex output
#8
lingminhao
opened
1 year ago
1
Forward and reverse barcode
#7
Frazapel
closed
9 months ago
1
flexiplex: command not found
#6
lingminhao
closed
1 year ago
2
Add option to report reads with no match
#5
nadiadavidson
opened
1 year ago
0
Support for bams?
#4
nadiadavidson
opened
1 year ago
0
Explicit NA for empty columns in output file
#3
ghar1821
closed
11 months ago
0
Duplication of reads with barcodes on +/- strand
#2
nadiadavidson
opened
1 year ago
1
Multi-thread option
#1
mcortes-lopez
closed
10 months ago
4