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Hello,
I encountered the following error during the execution of my circular RNA analysis pipeline:
```bash
Indexing .bam file...
open: No such file or directory
[bam_index_build2] fail to op…
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### Aims/objectives.
The nomenclature for RNA types (table `rna_type`) is fixed *e.g.*
```mysql
+---------+-------------------+
| id | name |
+---------+-------------------+
…
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Hey,
I am working on a dataset from an experiment that is specifically designed to induce circRNAs. But when I look in the 'library_info.csv', the number of circular RNA reads are very small.
S…
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Dear, developers
Hmm... I have the problem there are no such directories and command not found, I can't figure it out. I am using this script in a package with a full cenote-taker2 installation.
…
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Hi
I am running sailfish-cir using output generated by CIRI2. I noticed that some of the circular RNA transcripts which have been quantified by the tool have multiple values. What does this signify? …
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I see that there exist circular RNA support in Sailfish ( http://www.rna-seqblog.com/tag/sailfish-cir/ ), maybe it will be beneficial to see a Salmon port of it?
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Dear Pro.
I’m reading your paper titled “Genome-wide integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism”. I am very interest…
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**long non-coding RNA**: I used definition from wikipedia: Long non-coding RNAs (long ncRNAs, lncRNA) are non-protein coding transcripts longer than 200 nucleotides.
Alternative term: lncRNA
Parent: …
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### Description of the bug
I tried to run the test profile with `nextflow run nf-core/circrna -profile test,docker --outdir ./test` but get the error below. As both the test and test_full profiles us…
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Hi,
I am trying to use CircSplice to detect circular RNA from my samples. I have followed the steps as suggested in the readme file, however, I was unable to find the reftobed.pl script which is r…