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Hi,
I am interested in the application of BABEL to multimodal RNA / protein data. You mention you have a proof of concept for this. Would you please be able to point me to the relevant file, and gi…
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Add here important/cautious notes:
- Use an Antibody name different to the gene name. `merge_mtx` and `besca` will not raise error/warning but, when reading the matrix with citeseq=true, it will ma…
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Hi, I have a question, is it possible to run CiteSeq data with STAR solo?
Thanks for helping
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Your work is very useful to single-cell multiomics anlaysis. I have tried your model to run in Google colab L4 GPU with the example BMNC CITE-seq dataset. I have completely run the model for 3 times …
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Hi,
Thanks for developing this great tool. I just have 2 questions regarding CITE-seq-Count.
Question1:
So, I have a multimodal scRNAseq dataset in which both CITEseq and Hashtag antibodies wer…
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Hello,
I'm getting the following error during UMI correction, when running CITE-seq-Count 1.4.5, Python 3.8.
```
Correcting umis
Traceback (most recent call last):
File "/data/home/hmy961/c…
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Hello,
I was working on the stereo-citeSeq data, and I am using "stereoPipeline_pt_v7.1. The pipeline worked well and generated the report. However, I have a question about the multiomics analysis …
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I wanted to open a discussion about how we deal with CITEseq dataset so that we can align and if necessary adjust the standard workflow accordingly.
Some relevant sources:
- new tutorial from scan…
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A message from Vince on [slack](https://community-bioc.slack.com/archives/CM2CUGBGB/p1677310530239179)
> query on ch 12 that addresses CITEseq with ADT counts in altExp vs SingleCellMultiModal that…
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Everything looked to be running fine:
```
!CITE-seq-Count \
-R1 $Hash_R1 \
-R2 $Hash_R2 \
-t feature_barcode_onlist.csv \
-cbf 1 -cbl 16 \
-umif 17 -umil 28 \
-wl 737K-august-2016.txt \
-T 8 …