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### Is your feature related to a problem?
would be useful if the wf typed to clade, given the mpox PHEIC for clade 1b.
### Describe the solution you'd like
^
### Describe alternatives you've consi…
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We want to use a recent "full open" metadata file from [this page](https://docs.nextstrain.org/projects/ncov/en/latest/reference/remote_inputs.html#remote-inputs-open-files) to create snapshots/versio…
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Hi! I have been trying to convert my genind file to hierfstat so I can calculate some population statistics but I keep on getting an error when I run my code. Here's the error:
```
Error in (funct…
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A.D.5.2 is the dominant clade atm and has a few recognizable sublineages with mutations in F
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The following are countries that have reported mpox cases but have sources and/or clade information we are unable to verify. We need to decide if we are going to capture all cases of mpox globally or …
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I'm not sure the origin of these changes, but the ontology no longer builds due to a large number of unsatisfiable NCBITaxon classes. Current captured errors at:
http://skyhook.berkeleybop.org/go-o…
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We use `gs-aggregate` when selecting clades to filter from, as the output is not sorted alphabetically the result is quite ugly: https://github.com/GenSpectrum/dashboards/pull/302#issuecomment-2478796…
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This issue is something I noticed together with @isabeljoia while working on the mpv nextclade dataset.
The aim was to have a midpoint rooted tree without timetree, but augur consistently
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It makes it easier to compare our trees with the Nextstrain tree and replicate some published analysis, e.g. Bloom et al.'s mutational spectra across variants.
These definitions are probably more s…
szhan updated
2 months ago
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Has Mpox clade I been designated as Clade Ia and Clade Ib? And is this being reflected in the nextstrain? If so, what mutations are considered? Please, assist. Thank.
Walter