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Did you have a chance to explore mapping the gene names to Ensembl IDs?
I'm looking into that now and don't know if there's a recommended way.
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User submitted a request to Ronna:
I’m running into a weird issue across a few vestibular datasets, where there are two Ensembl IDs for “Nrxn2”. This is an issue for the utricular datasets I was ho…
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I made a strange observation. When I see the PlasmoDB gene Database, I see that there are `5254` genes but when using Biomart, I get only `4903` genes. Various characterized genes such as `"PBANKA_010…
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This includes:
* ENSEMBL:ENSP00000382856
* ENSEMBL:ENSP00000385720
* ENSEMBL:ENSP00000385721
* and many others
May or may not be related to https://github.com/TranslatorSRI/Babel/issues/153
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The returned Ensembl ids of the probe map of `probeToMeanPromoterMethylation ` are transcripts (ENST*) but should be genes (ENSG*), as probes are mapped to the genome and not transcript-level informa…
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For example: [HERC2P9](https://platform.opentargets.org/search?q=herc2%20pseudogene%209&page=1&entities=target) or [AKAP17A](https://platform.opentargets.org/search?q=AKAP17A&page=1&entities=target) a…
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Nodenorm includes yeast genes. For these genes, it looks like we have ncbigene, SGD, UniProt and PR, but for some reason, not ensembl.
We're bringing in ensembl genes, so why not yeasts?
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Hi,
Thank you so much for building this package, I have two recommendations to improve the package.
1. Not converting the Gene ID's to Ensembl IDs
2. Include the metadata created by Spotclean in …
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Pertains to #901
- [ ] form of ensembl URIs. The slash form is more canonical ie https://identifiers.org/ensembl/ENSMUSG00000019772 not https://identifiers.org/ensembl:ENSMUSG00000019772. Also in…
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In GitLab by @marcrr on Nov 25, 2015, 09:14
Allow other IDs than Ensembl, at least UniProt (which can be obtained from most other IDs through http://www.uniprot.org/uploadlists/). For Ensembl, conver…