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Hello,
I have an issue with the FASTA format. It is a FASTA format which was made from the Illumina Sequencing and annotated with KREGG. We have tried a first time wihtout Uniprot annotation and i…
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I aligned ~3k of the RdRP domain RNA virus. The output is like the following
```
>1
...................................................................................V--------.....................…
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Use FASTA sequence data input instead of TPF. Current script used: `rapid_split.pl`
Creation of FASTA output rather than TPF, so that curators don't have to run another script, might be nice to sav…
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I want `-a sw_scan_16 -e 1 -o 11`, however, `-O EMOBOSS` also not work when `-a sw_stats_striped_16` (defulat setting)
```
[lihuilin@login01 bin]$ ls
myseqs.fasta mytrace parasail1.csv parasail_…
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Hi,
I just noticed your PepScore on NC, and it's quite interesting work! I wonder how to generate the "input the random sequence file in the fasta format" for _CalculateFDR.ORFlength.pl_ script? Does…
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Hi, hope someone can help me.
I have a problem with the construction of an AAI Matrix. When i run compareM, Ubuntu returns me this message "No genomes found in directory: input_AAI. Check the --file…
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Sequences in FASTA format (may require a separate input option)
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I am using IQ-TREE2 on a computer grid that monitors CPU usage. If a process exceeds the number of requested threads it will error, even if more than that number of threads are available. I am receivi…
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Right now (as of PR #5) when a sequence is loaded via drag and drop the first line is ignored, corresponding to FASTA data format. This will not work for all formats - default should probably be to co…
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Hello,
I want to run core gene analysis with Spine locally and also want to include gff file, I use -f for genome_files.txt which containing paths to fasta file and their coresponding gff files. It i…