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Hi,
I am trying to run AMRFinderPlus on a set of phage genomes to annotate the AMR genes. I have the nucleotide FASTA file, and the protein FASTA and GFF files predicted generated using prodigal. …
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### Contact Details
ks164@duke.edu
### Scripts
10a-gwas_aar.sh
### What happened?
Running fastGWA on twin (MZ and DZ) data gives the following error:
Estimating the genetic variance (Vg) by fa…
ks164 updated
2 weeks ago
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MVP data:
[MVP](https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002453.v1.p1) is an ongoing prospective cohort study and mega‐biobank in the Department of Veterans Affairs Heal…
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It's a great package for genetic analysis, but it only work in windows platform , it 's slowly for analysis many phenotype in the meantime. so I request for modify the package for Linux platform suppo…
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I have two feature requests related to optimization tracking and strategy management in Trace:
1. **Persistent Storage of Optimization Steps**
How can I store each optimization step (including p…
doxav updated
23 hours ago
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Dr. Huang,
Hope all is well, I am currently trying to run the example data that is provided when you first open the parentage software. While the genetic diversity analysis works fine, if you try t…
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Hello, esteemed LDSC team,
I would like to know how to calculate partitioned genetic correlations. Prior to this, I have already completed the analysis of partitioned heritability，This will be of gr…
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### Contact Details
ks164@duke.edu
### Scripts
09-PRS_EWAS.sh
### What happened?
module fails when generating PRS-non-genetic PC correlation plots.
My assumption is that the error is caused by…
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Hello, I'm a beginner in population genetic data analysis, and I don't quite understand the concept of pool sequencing. For example, I currently have BAM files for multiple populations of a species. D…
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Hi all,
I am planning to use Coloc for identifying shared genetic signals for two EQTL-GWAS studies.
Given that the reference genome used in EQTL data is GRCh38, while many GWAS data use GRCh37…