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Could you please help me understand why estimated genome size is almost half in this case? This is a fish genome, and I expect it to be around 1G.
Do I need to sequence more to increase the covera…
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Hi everyone I am new to MaSuRCA Reference guided assembly. I am using chromosome_scaffolder.sh for scaffoding. I have shared the log info, I don't know what is the error. Could you help me with this?
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Hi nanosv team,
Is your tool compatible with human genome version hg38/GRCh378 ?
If yes, did you produce the bed file for compute the coverage distribution with this genome and could you share it ?
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Hello teacher, could you please help me identify where the problem is?
batmeth2 methyGff --coverage 4 -nC 1 --genome genomic.fa -b5 ../genes.bed5 --body --promoter --GENE --distance 2000 --step 0.0…
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I have targeted DNA sequencing for a tumour and I do not have any normal samples (matched or even non matched)
I am trying this but I get error
```
Rscript /R/x86_64-pc-linux-gnu-library/4.4/P…
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Dear team Genomescope2.
I am using the tools to understand why I have a bad novo assembly, with more than 1M of contigs and small.
I have illumina sequence of Cavia Porcellus (guinea pig), geno…
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Hello dear developers,
I have run PECAT on a diploid plant genome (heterozygosity=3.3) and obtained a primary (4.7Gb) and alternate (2.6Gb) set and haplotype1 (4.7Gb) and haplotype2 (2.8Gb). Do yo…
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[string_serialization](https://linkml.io/linkml-model/latest/docs/string_serialization/) isn't actionable like `range` or `pattern`. It's intended as a hint for how a software agent might want to popu…
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S:K478T is now trending globally even if its exact share is not easy to establish due the confounding of missing coverage.
Here i want to propose a mini saltation S:K478T lineage under KP.1.1.3
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## Summary:
In the old `pyani` we used _Blochmannia_ genome example datasets (among other things), and moving to `pyani-plus` gives us an opportunity to update our choices to reduce test run time a…