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The _plasmid.gfa files doesn't contain typical gfa-data. Therefore I'm not able to open it with Bandage.
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Hi there,
I'm running `metaMDBG gfa` version 1.0 installed via bioconda as follows `metaMDBG gfa --assembly-dir /scratch3/rei219/projects/SBM/outputs/metamdbg/plables_test/B --k 21 --contigpath --t…
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This exposure has some missing values for GFA quantities. These should have been replaced by zeros in `desi_tsnr_afterburner`.
```
NIGHT EXPID TILEID TILERA TILEDEC MJD ... SKY_MAG…
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**Is your feature request related to a problem? Please describe.**
- When I polish a Flye assembly with Medaka I lose assembly information since `medaka_consensus` accepts `fasta` files instead of `…
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Hello Xiaofei,
I have used HapHic at MAPQ1 NM < 3 as explained in the front matter page, the initial contigs were from the p_utg.fa and the --gfa file used was the corresponding gfa file.
 to convert your pipeline's GFA file to rGFA.
By any chance…
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Trois extraits :
Les Sociétés Civiles Agricoles (la suite), la requête serait :
• Forme juridique au répertoire SIRENE = 6597
• Forme juridique au RCS = « Société Civile Agricole »
• Société active…
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I’m wondering if there’s a way to extract only specific assemblies from the PGGB-generated GFA file. For example, is it possible to extract just the paths covered by ^HH* and ^NA* to make a subset of …
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**1. What were you trying to do?**
I used `vg rna` to build a spliced pangenome and a pantranscriptome with a GFA file from PGGB and a gff3 file. Similarly, I used `vg autoindex` to build index f…
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Hi there,
I am using Hifiasm (version 0.19.7-r598) to assemble a plant genome (2n=28) with HiFi and Hi-C data.
First, assuming it’s a diploid plant, so I run with command: `hifiasm -o OS010681.a…