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Hi Team,
Recently I meet a problem when using the dataset of HT-SELEX motifs.
A single motif in HT-SELEX datset in the factorbook database has two different names from the two download resource:
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Hello,
I was able to parse the fastq files in aptasuite v.0.9.4. (the gui) but afterwards, the aptamer pool tab keeps calculating without showing any data. I got the following log in return.
Any h…
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# Some thoughts about the evaluation of the PFM submitted by applicants
- **PFM**: position frequency matrix
- **PWM**: position weight matrix
See the [benchmarking protocols](https://ibis.auto…
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Where did we get the initial DB from?
Where did we get the metabolic gene list from?
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Hi Marcio
Colin has confirmed that while this does bind DNA this is a AT-rich interactive domain-containing protein and the DNA binding is not specific enough to provide a genomic location/address.
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Hi Marcio (NTNU)
Q2VWA4 | GO:0000981 | ECO:0000255 (ISM) | PMID:19274049
Discussion so far
Ruth Lovering | 07-MAY-2020 | I don't think there is sufficient evidence to suggest this protein bi…
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Hi
WRT InterPro:IPR028762
sorry to bother you but in the transcription review it has been agreed that SKOR1 and SKOR2 and probably SKI and SKIL are dbTFs. If you have evidence that these do not…
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Hi Marcio
I don't think this protein binds DNA. PMID: 29615614 states in discussion:Because Gon4l does not bind DNA directly, we predict that Gon4l-enriched genomic loci are direct targets of chromat…
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Hi Marcio
Disputed | NTNU | P12755 | GO:0000981 | ECO:0000255 (ISM) | PMID:19274049 | InterPro:IPR009061\|InterPro:IPR010919
Ruth Lovering | 07-MAY-2020 | I don't think there is sufficient evid…
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I think these are duplicates so one should be obsoleted.