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Please see this repository:
https://github.com/TransBioInfoLab/Bioc2019pathwayPCA
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Error in runHarmony.default(obj = x.sp, eigs.dims = 1:22, meta_data = x.sp@sample): eigs.dim is missing
Traceback:
1. runHarmony(obj = x.sp, eigs.dims = 1:22, meta_data = x.sp@sample)
2. runHarmo…
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Dear all,
What is the corresponding table in case of mouse genome in this command?
genes.df = read.table("gencode.v19.annotation.gene.bed");
Thanks
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I was thinking about adding [Integrative pathway enrichment analysis of multivariate omics data](https://doi.org/10.1038/s41467-019-13983-9) by Paczkowska et al from the recent PCAWG release.
> 202…
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Dear developers,
I was going through this vignette [Integrative analysis in Seurat v5](https://satijalab.org/seurat/articles/seurat5_integration) and would like to reproduce the figures, mainly to …
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https://pubmed.ncbi.nlm.nih.gov/26061751/
Study in Mercurial: http://data.cbioportal.mskcc.org/hg/cbio-portal-data/file/tip/studies/lgg/tcga/pub
Please keep this checklist for curation of a new st…
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Good day, i am a M.SC student of Bioinformatics at University of Bradford, pls i have an assignment that i have chosen to study and replicate your work on the Integrative Pathway Analysis with pathway…
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Hi,
Thanks for making this package. I develop integrative methods to quantify cancer evolution (see https://townsend-lab-yale.github.io/cancereffectsizeR/index.html), and your armSCNA peak-finding a…
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Add analysis: temperature from edf data (single + group); activity from edf data (single + group); emg normalize (integrative, only group); metabolism (single + group).
Fix saving format (excel, ea…