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### Description of feature
IsoformSwitchAnalyzeR is a powerful tool for identifying isoform switches in transcript data. It would allow the end user to analyze and visualize isoform switches.
My …
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Hi
After running exampleSwitchListAnalyzed, there is all "gene_switch_q_value" being "NA".
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Hello, I encountered an issue as described in the title.
Building Spectral Library using DIA-NN v1.9.1
I created a spectral library using DIA-NN 1.9.1 with the following parameters. The output f…
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**Are you using the latest release?**
1.8.13
Hi there,
I am using funannotate to convert a gff3 to a .tbl file, then to convert the .tbl file to a .gbk file, and then to spit out the transcript…
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Hi Eric,
After running minimap2, would it be necessary to collapse the redundant isoforms before using ESPRESSO?
Thanks~
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Hey guys, thanks for the tool! Very useful!
I'm a bit confused about the "num_reps" parameter. And also who it relates to the event probabilities.
I have implemented an alternative splicing (AS)…
ls233 updated
7 months ago
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Previously, our team was not able to successfully output a gene count matrix from Stringtie. I was able to run Stringtie on Andromeda and output a gene count matrix but many of the rownames are design…
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Please help
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@jpfeuffer sometimes the pipeline fails in the id part because of the peak-peaking step by the ThermoRawFileParser. Would be great to "restart" the pipeline, same parameters but with the openms peak p…
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Hi
Will nanotail be able to support tailfindr output files ?
Kind Regards